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1. goodarzilab/cdsFM goodarzilab/cdsFM Public

   cdsFM: Repository of Codon-based Foundation Models

   Python 2

2. theislab/cpa theislab/cpa Public

   The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of dr…

   Python 88 17

3. theislab/scarches theislab/scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 335 51

4. theislab/trVAE theislab/trVAE Public

   Conditional out-of-distribution prediction

   Python 55 12

5. theislab/scgen theislab/scgen Public

   Single cell perturbation prediction

   Python 268 56

6. theislab/scArches-reproducibility theislab/scArches-reproducibility Public

   Reproducing result from the paper

   Jupyter Notebook 33