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VLab Issue #88972 version 1.2 of CAMPS
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Main updates include:
* Removal of the camps database
* Level no longer a dimension
* Fixed precip scaling factor error in metar_driver
* Got rid of the predictor class
* modify get_(pre)processes functions
* Cleaned up and modified procedures.yaml
* Redirect where data source information is retrieved
* Removed O&M terminology, replace with SOSA where necessary.
* Removed result_time and valid_time time classes
* Made time variables either coordinate variables or auxiliary
* coordinate variables
* reorganize and update netcdf.yaml
* Added more explicit documentation to control files

Squashed commit of the following:

commit 13c0c626d4d80601d297f50740b12f363d06a70f
Author: Justin Wilkerson <[email protected]>
Date:   Fri Feb 19 15:39:30 2021 +0000

    VLab Issue #88325 changing how source is handled

    1)add 'source' attribute to grib2_to_nc_control.yaml
    2)change 'PROV__used' attribute in primary variables to
    'PROV__hadPrimarySource'
    3)Changed PROV__Entity to PROV__entity
    4)Modified PROV__hadPrimarySource entries to not be
    paths to the code registry, for now.

    Change-Id: Idd8a9739bec96eeb4c538e0289c68da876f77ade

commit 4c6e9c9994ca5c00a648da75410d6e89b0effb45
Author: Justin Wilkerson <[email protected]>
Date:   Tue Feb 16 15:33:26 2021 +0000

    VLab Issue #88163: bug fixes

    1) fix rounding error introduced when converting units
    2) sort data by station information when combining data from
    multiple sources in mospred predictands

    Change-Id: I9654826bb9e32e2730a910d4b301c9d31318d98d

commit 32d285bc17412d8c57c3f1fa9071112b72b934c4
Author: Emily Schlie <[email protected]>
Date:   Fri Feb 5 19:45:18 2021 +0000

    VLab Issue #76080 updating and fixing metadata issues

     - Adding patch to fix station lat/lons coming out of metar_to_nc

        1) PROV__Used and Activity changed to lower case
        2) Updated procedures.yaml and subsequent changes needed for
           driver scripts where necessary.
        3) Change processes to preprocesses for grib2_to_nc_control
           procedures declaration.

        A note about the grib2_to_nc proprocesses.  If it is left blank
        or set to False, the development fails on mospred_driver.  We are
        getting our source information from PROV__used, which in this case
        is only present in our metadata variables added as preprocesses.
        We need a different way of accessing source information.  PROV__used
        could be moved elsewhere.  But we should also not be getting it from
        user settings in grib2_to_nc, but our input file instead.

    Squashed commit of the following:

    commit 9146e8879b41cb10ae3101291d95d461863c8c57
    Author: Emily Schlie <[email protected]>
    Date:   Fri Feb 5 18:18:21 2021 +0000

        Updating and fixing a few metadata issues

        1) PROV__Used and Activity changed to lower case
        2) Updated procedures.yaml and subsequent changes needed for
           driver scripts where necessary.
        3) Change processes to preprocesses for grib2_to_nc_control
           procedures declaration.

        A note about the grib2_to_nc proprocesses.  If it is left blank
        or set to False, the development fails on mospred_driver.  We are
        getting our source information from PROV__used, which in this case
        is only present in our metadata variables added as preprocesses.
        We need a different way of accessing source information.  PROV__used
        could be moved elsewhere.  But we should also not be getting it from
        user settings in grib2_to_nc, but our input file instead.

        Change-Id: I2e46046b32b37f26937a7c595c4a59527b24de81

    commit 19323a3a0d4f9170a57f0a5fa041bd2b6dbd9f65
    Merge: 38c38182 34eb00d4
    Author: Emily Schlie <[email protected]>
    Date:   Mon Feb 1 17:10:56 2021 +0000

        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into emily

        Change-Id: I90f0863d1d66010bc8d274142548019182dbafff

    commit 38c3818263910d06efcb7a0781f219b456caea33
    Author: Emily Schlie <[email protected]>
    Date:   Thu Jan 28 17:43:58 2021 +0000

        Getting rid of PROV__Used and PROV__Activity, replacing with lower
        case.

        Change-Id: Ia709f0ac53a92ff7a7ca6e5da55ef1f447f8a697

    commit cbbf5042b919f1cf5810c96965d6cdb261be587c
    Merge: 0890f084 e8273cee
    Author: Emily Schlie <[email protected]>
    Date:   Wed Jan 27 14:55:01 2021 +0000

        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into emily

        Change-Id: I7a7cf04b0ff1a30560153bf36f23a9c7daf9857c

    commit 0890f084d68be4aeccdc419baabd7d274e3f8a4b
    Author: Emily Schlie <[email protected]>
    Date:   Thu Dec 3 17:15:11 2020 +0000

        Adding netcdf_new.yaml to branch

        Change-Id: I9afc349f38a76f6222357137daef42ec04ca4e0b

    Change-Id: I451d694beed063a8e73e75863530637e45a6111a

commit 34eb00d4ff5b9620a5b5e47a4a08152b0701b8d1
Author: Eric Engle <[email protected]>
Date:   Tue Jan 26 17:12:39 2021 +0000

    VLab Issue #87230 Precip Scaling Issues

    - Fixed issue in qc_precip.py where 3-h and 6-h precip amounts were not
      being range checked.

    - Added logic in metar_driver.py to set trace amounts (input as -4) to a
      real value of 0.004.

    Change-Id: I350d72dc50c9f7d38a145b381de920e6ffbf109f

commit e8273cee57ae8ba579b97451240ac8892ddaf32e
Author: Justin Wilkerson <[email protected]>
Date:   Mon Jan 4 19:29:48 2021 +0000

    VLab Issue #86420 coordinate/dimension metadata

    Changes include:
    1) removal of level as a dimension
    1a) introduction of new "vertical_coord" attribute
    2) rename of dimensions/coordinate variables to match each other
    3) changing OM__ to SOSA__
    4) changing stations variable to string from char
    5) removal of valid/result times
    6) introduction of updated and re-organized netcdf.yaml
    7) other related changes to time dimensions,
    coordinate variables, etc
    8) Modified pred.yaml control file to fix precip interp default

    Squashed commit of the following:

    commit 653969e8bcba798899580572c640d2772acbda27
    Author: Justin Wilkerson <[email protected]>
    Date:   Mon Jan 4 19:04:21 2021 +0000

        adding time variables to ancillary variables

    commit 86babc4be70e028c11e986290fd6f0d2ebfc9362
    Author: Justin Wilkerson <[email protected]>
    Date:   Thu Dec 31 16:40:35 2020 +0000

        cleaning up code

    commit 7508af816fa5da10818a79419776a6e85f9a2572
    Author: Justin Wilkerson <[email protected]>
    Date:   Wed Dec 30 20:51:33 2020 +0000

        adding new netcdf.yaml

    commit 1dd9ae56cf41a65f7ff4baebf74bbeec313235db
    Author: Justin Wilkerson <[email protected]>
    Date:   Wed Dec 30 19:27:42 2020 +0000

        Many changes including:

        1) removal of level as a dimension
        2) adding vertical coordinate as an attribute
        3) renaming of dimensions/variables to match
        4) making stations a string variable
        5) introducing newly organized netcdf.yaml
        6) other related changes to time dimensions, coordinate variables, etc
        7) removal of valid/result times

    Change-Id: I323a13af4f3471d0cc6fdb73aba46d5c2ecb8907

commit 8dffcf4e932627528d49a50fa2b17be364bfe791
Author: Greg Zylstra <[email protected]>
Date:   Thu Dec 10 16:00:03 2020 +0000

    VLab Issue #76080 Remove component metadata from primary's

    Squashed commit of the following:

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    commit badc5307ae45388f184f341dacd98966dae3b3a8
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        align forecast_driver with recent changes in equations_driver

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        Clean up equations_driver output

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    commit d4a26e992a8a37f89cecca4505a7d85d8005b4ee
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        small correction

        Change-Id: Icb1af986e70b38c597f9a73cfb32142682fd7e5d

    commit 180fde4d980955eafacfd09341c2b846b229811c
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        Replace Predictor objects with dictionaries

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        Merge branch 'Greg' of ssh://vlab.ncep.noaa.gov:29418/camps into Greg

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    Author: Greg Zylstra <[email protected]>
    Date:   Mon Nov 16 16:43:56 2020 +0000

        correct components for total precip

        Change-Id: I187303c294cda9e4ccf8dcb382830b03c0a807ee

    commit d9c87430e280df283cc42552a3e656f11fe427b2
    Author: Greg Zylstra <[email protected]>
    Date:   Mon Nov 16 16:43:56 2020 +0000

        correct components for total precip

        Change-Id: I187303c294cda9e4ccf8dcb382830b03c0a807ee

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        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into Greg

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    Date:   Fri Oct 23 16:17:37 2020 +0000

        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into Greg

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    commit 4cd163af3a371d56986bf98a4a14196a8fea51bf
    Author: Greg Zylstra <[email protected]>
    Date:   Mon Oct 19 18:32:02 2020 +0000

        clean up metadata regarding max, min, and sum

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    Date:   Fri Oct 16 17:10:05 2020 +0000

        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into Greg

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    commit a0f80d479e4cce2c864e927a2bf956db68f5acf1
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        streamline variable naming with processes

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    Change-Id: Iaf9b396d8d84fdae682675a576714b0930e58853

commit c88deee0b0239aacac81d785043cd007a9de8f07
Author: Greg Zylstra <[email protected]>
Date:   Fri Dec 4 14:35:52 2020 +0000

    VLab Issue #79797 Add masking to equations_driver output

    Squashed commit of the following:

    commit badc5307ae45388f184f341dacd98966dae3b3a8
    Author: Greg Zylstra <[email protected]>
    Date:   Mon Nov 30 18:40:11 2020 +0000

        align forecast_driver with recent changes in equations_driver

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    commit fcc3bfa458a1eb2cfb49c24e639c826dcf4d0371
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        Clean up equations_driver output

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    commit d4a26e992a8a37f89cecca4505a7d85d8005b4ee
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        small correction

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        Replace Predictor objects with dictionaries

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        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into Greg

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        correct components for total precip

        Change-Id: I187303c294cda9e4ccf8dcb382830b03c0a807ee

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        correct components for total precip

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        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into Greg

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    commit 4cd163af3a371d56986bf98a4a14196a8fea51bf
    Author: Greg Zylstra <[email protected]>
    Date:   Mon Oct 19 18:32:02 2020 +0000

        clean up metadata regarding max, min, and sum

        Change-Id: I8efdac6c025ed64191f43b44cb3cb0143fc3c45b

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        streamline variable naming with processes

        Change-Id: I2b0f384fe01f4e41d457ee497dba73f421705d23

    Change-Id: I9aee066bc36cf44fb85bb44e6d19eb14d4949456

commit a16384099136b069bcd50d15bac5df7e83ce1e9f
Author: Greg Zylstra <[email protected]>
Date:   Wed Nov 18 18:14:15 2020 +0000

    VLab Issue #85117 Replace Predictor objects with dictionaries

    Amend#2 - fixed a couple copy statements to deepcopy

    Amend - fixed some import statements and syntax errors

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        correct components for total precip

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        correct components for total precip

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        clean up metadata regarding max, min, and sum

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    Author: Greg Zylstra <[email protected]>
    Date:   Thu Oct 15 17:52:56 2020 +0000

        streamline variable naming with processes

        Change-Id: I2b0f384fe01f4e41d457ee497dba73f421705d23

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commit 8101823cebb820315cba8321589d65037bb6354a
Author: Greg Zylstra <[email protected]>
Date:   Mon Nov 16 17:12:31 2020 +0000

    VLab Issue #76080 clean comps for total precip

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        correct components for total precip

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        clean up metadata regarding max, min, and sum

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        streamline variable naming with processes

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commit 0b9fadcf4635ebc3fd46a17f437970bb5875a742
Author: Justin Wilkerson <[email protected]>
Date:   Mon Nov 9 14:47:29 2020 +0000

    VLab Issue #84504 Fixes for Total Precip

    Some bug and code fixes for Total Precip
    Includes some related metadata fixes for netcdf.yaml

    Change-Id: Iea819e7409396ca4fa3419cab77a6fe40fcddf3b

commit 45fd0e73119bc8e900383a33b9bb85f6b67fcc26
Author: Justin Wilkerson <[email protected]>
Date:   Mon Nov 2 16:17:24 2020 +0000

    VLab Issue #84504 Removal of fetch and database

    Major update. Includes:
    1)Complete removal of dependency on database
    2)Removal of fetch module
    3)Creation of a new "get_var" function in reader
    3a)variables are now fetched directly comparing
    supplied metadata to variable attributes in input
    file.
    3b)multiple dates may now be fetched and processed
    at a time.
    4)Redo of smooth to loop over kernal, becoming
    grid independent
    5)Send budget interp into bilinear interp after
    pre-processing step
    6)Creation of "add_base_metadata" variable to
    replace "add_db_metadata", use for autofill
    upon Camps_data initialization
    6a)Other minor Camps_data changes required to allow
    removal of database

commit 0117efaad57fa42b37000a5db533575ce71e5d7b
Author: Greg Zylstra <[email protected]>
Date:   Tue Oct 20 18:32:21 2020 +0000

    VLab Issue #76080 Metadata cleanup for max, min, and sum

    Added a bug fix, edited create.py and temperature.py
    to to change maximum/minimum to max and min

    Squashed commit of the following:

    commit 4cd163af3a371d56986bf98a4a14196a8fea51bf
    Author: Greg Zylstra <[email protected]>
    Date:   Mon Oct 19 18:32:02 2020 +0000

        clean up metadata regarding max, min, and sum

        Change-Id: I8efdac6c025ed64191f43b44cb3cb0143fc3c45b

    commit 794e248613317f63563b4a9afac27d402450a8bc
    Merge: a0f80d4 d348add
    Author: Greg Zylstra <[email protected]>
    Date:   Fri Oct 16 17:10:05 2020 +0000

        Merge branch 'development' of ssh://vlab.ncep.noaa.gov:29418/camps into Greg

        Change-Id: Ic31885621abfba3560430e32bd2868ac941a1aa4

    commit a0f80d479e4cce2c864e927a2bf956db68f5acf1
    Author: Greg Zylstra <[email protected]>
    Date:   Thu Oct 15 17:52:56 2020 +0000

        streamline variable naming with processes

        Change-Id: I2b0f384fe01f4e41d457ee497dba73f421705d23

    Change-Id: Ifb239287726d63db6d6b58e21bb042d3cdac3578

commit d348addeb2de03586e6c086029b5f90feb317a09
Author: Greg Zylstra <[email protected]>
Date:   Fri Oct 16 13:51:46 2020 +0000

    VLab Issue #76080 Streamline naming variables

    Squashed commit of the following:

    commit a0f80d479e4cce2c864e927a2bf956db68f5acf1
    Author: Greg Zylstra <[email protected]>
    Date:   Thu Oct 15 17:52:56 2020 +0000

        streamline variable naming with processes

        Change-Id: I2b0f384fe01f4e41d457ee497dba73f421705d23

    Change-Id: Icd2d06d050e51613d11f9f5026e8cea5285edac8

Change-Id: I0eeae2731adad047a84f3e409e0800944de1a3f8
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emilye12 committed Mar 4, 2021
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2 changes: 1 addition & 1 deletion camps/StatPP/regression/plr.py
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Original file line number Diff line number Diff line change
Expand Up @@ -464,7 +464,7 @@ def make_consistent_dims(predictors, predictands):
all_locs = []
all_vars = predictands + predictors
for var in all_vars:
if var.dimensions.index('number_of_stations') == 0:
if var.dimensions.index('stations') == 0:
var.data = var.data.T
pred_stations = predictors[0].location.get_stations()
tand_stations = predictands[0].location.get_stations()
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