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Bump the python-dependencies group with 7 updates #412

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merged 2 commits into from
Sep 3, 2024

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Bumps the python-dependencies group with 7 updates:

Package From To
pyyaml 6.0.1 6.0.2
netcdf4 1.7.1.post1 1.7.1.post2
couchbase 4.3.0 4.3.1
numpy 2.0.1 2.1.0
metpy 1.6.2 1.6.3
types-pyyaml 6.0.12.20240724 6.0.12.20240808
ruff 0.5.6 0.6.3

Updates pyyaml from 6.0.1 to 6.0.2

Release notes

Sourced from pyyaml's releases.

6.0.2

What's Changed

  • Support for Cython 3.x and Python 3.13.

Full Changelog: yaml/pyyaml@6.0.1...6.0.2

6.0.2rc1

  • Support for extension build with Cython 3.x
  • Support for Python 3.13
  • Added PyPI wheels for musllinux on aarch64
Changelog

Sourced from pyyaml's changelog.

6.0.2 (2024-08-06)

Commits

Updates netcdf4 from 1.7.1.post1 to 1.7.1.post2

Commits

Updates couchbase from 4.3.0 to 4.3.1

Commits
  • b25dff2 Update C++ core to 1.0.1
  • 087ac76 PYCBC-1612: Allow durability setting for multi mutation operations
  • 9cf154f Fix API reference for 'network' cluster option
  • See full diff in compare view

Updates numpy from 2.0.1 to 2.1.0

Release notes

Sourced from numpy's releases.

2.1.0 (Aug 18, 2024)

NumPy 2.1.0 Release Notes

NumPy 2.1.0 provides support for the upcoming Python 3.13 release and drops support for Python 3.9. In addition to the usual bug fixes and updated Python support, it helps get us back into our usual release cycle after the extended development of 2.0. The highlights for this release are:

  • Support for the array-api 2023.12 standard.
  • Support for Python 3.13.
  • Preliminary support for free threaded Python 3.13.

Python versions 3.10-3.13 are supported in this release.

New functions

New function numpy.unstack

A new function np.unstack(array, axis=...) was added, which splits an array into a tuple of arrays along an axis. It serves as the inverse of [numpy.stack]{.title-ref}.

(gh-26579)

Deprecations

  • The fix_imports keyword argument in numpy.save is deprecated. Since NumPy 1.17, numpy.save uses a pickle protocol that no longer supports Python 2, and ignored fix_imports keyword. This keyword is kept only for backward compatibility. It is now deprecated.

    (gh-26452)

  • Passing non-integer inputs as the first argument of [bincount]{.title-ref} is now deprecated, because such inputs are silently cast to integers with no warning about loss of precision.

    (gh-27076)

Expired deprecations

  • Scalars and 0D arrays are disallowed for numpy.nonzero and numpy.ndarray.nonzero.

    (gh-26268)

  • set_string_function internal function was removed and PyArray_SetStringFunction was stubbed out.

... (truncated)

Commits
  • 2f7fe64 Merge pull request #27236 from charris/prepare-2.1.0
  • b6f434f REL: Prepare for the NumPy 2.1.0 release [wheel build]
  • 3cf9394 Merge pull request #27234 from charris/backport-25984
  • 7443dcc Merge pull request #27233 from charris/backport-27223
  • 85b1cab BUG: Allow fitting of degree zero polynomials with Polynomial.fit
  • 395a81d DOC: reword discussion about shared arrays to hopefully be clearer
  • 5af2e96 Move NUMUSERTYPES thread safety discussion to legacy DType API docs
  • d902c24 DOC: add docs on thread safety in NumPy
  • c080180 Merge pull request #27229 from charris/backport-27226
  • 44ce7e8 BUG: Fix PyArray_ZeroContiguousBuffer (resize) with struct dtypes
  • Additional commits viewable in compare view

Updates metpy from 1.6.2 to 1.6.3

Release notes

Sourced from metpy's releases.

1.6.3

Highlights

  • Support for NumPy 2.0 and Pint 0.24
  • Fix for error in galvez_davison_index
  • This the last release that will support Python 3.9

What's Changed

Bugs Fixed 🐛

Other Changes

New Contributors

Full Changelog: Unidata/MetPy@v1.6.2...v1.6.3

Commits
  • 34bfda1 Merge pull request #3609 from Unidata/dependabot-pip-ci-ruff-0.6.2
  • 6ea1d87 Merge pull request #3608 from Unidata/dependabot-pip-ci-shapely-2.0.6
  • 7cc112f CI: (deps): Bump ruff from 0.6.1 to 0.6.2 in /ci
  • a86f343 CI: (deps): Bump shapely from 2.0.5 to 2.0.6 in /ci
  • d00544a Merge pull request #3606 from dopplershift/bump-numpy2
  • de0cf13 MNT: Update docstring example output for numpy 2
  • 31dab04 MNT: Slightly bump tolerance for numpy 2
  • 5b5617d MNT: Fix meteogram example for numpy 2
  • 2329aa4 MNT: Work around pydata/xarray#9043
  • 9cf5e25 CI: Bump to numpy 2.0.1
  • Additional commits viewable in compare view

Updates types-pyyaml from 6.0.12.20240724 to 6.0.12.20240808

Commits

Updates ruff from 0.5.6 to 0.6.3

Release notes

Sourced from ruff's releases.

0.6.3

Release Notes

Preview features

  • [flake8-simplify] Extend open-file-with-context-handler to work with dbm.sqlite3 (SIM115) (#13104)
  • [pycodestyle] Disable E741 in stub files (.pyi) (#13119)
  • [pydoclint] Avoid DOC201 on explicit returns in functions that only return None (#13064)

Rule changes

  • [flake8-async] Disable check for asyncio before Python 3.11 (ASYNC109) (#13023)

Bug fixes

  • [FastAPI] Avoid introducing invalid syntax in fix for fast-api-non-annotated-dependency (FAST002) (#13133)
  • [flake8-implicit-str-concat] Normalize octals before merging concatenated strings in single-line-implicit-string-concatenation (ISC001) (#13118)
  • [flake8-pytest-style] Improve help message for pytest-incorrect-mark-parentheses-style (PT023) (#13092)
  • [pylint] Avoid autofix for calls that aren't min or max as starred expression (PLW3301) (#13089)
  • [ruff] Add datetime.time, datetime.tzinfo, and datetime.timezone as immutable function calls (RUF009) (#13109)
  • [ruff] Extend comment deletion for RUF100 to include trailing text from noqa directives while preserving any following comments on the same line, if any (#13105)
  • Fix dark theme on initial page load for the Ruff playground (#13077)

Contributors

Install ruff 0.6.3

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/astral-sh/ruff/releases/download/0.6.3/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

... (truncated)

Changelog

Sourced from ruff's changelog.

0.6.3

Preview features

  • [flake8-simplify] Extend open-file-with-context-handler to work with dbm.sqlite3 (SIM115) (#13104)
  • [pycodestyle] Disable E741 in stub files (.pyi) (#13119)
  • [pydoclint] Avoid DOC201 on explicit returns in functions that only return None (#13064)

Rule changes

  • [flake8-async] Disable check for asyncio before Python 3.11 (ASYNC109) (#13023)

Bug fixes

  • [FastAPI] Avoid introducing invalid syntax in fix for fast-api-non-annotated-dependency (FAST002) (#13133)
  • [flake8-implicit-str-concat] Normalize octals before merging concatenated strings in single-line-implicit-string-concatenation (ISC001) (#13118)
  • [flake8-pytest-style] Improve help message for pytest-incorrect-mark-parentheses-style (PT023) (#13092)
  • [pylint] Avoid autofix for calls that aren't min or max as starred expression (PLW3301) (#13089)
  • [ruff] Add datetime.time, datetime.tzinfo, and datetime.timezone as immutable function calls (RUF009) (#13109)
  • [ruff] Extend comment deletion for RUF100 to include trailing text from noqa directives while preserving any following comments on the same line, if any (#13105)
  • Fix dark theme on initial page load for the Ruff playground (#13077)

0.6.2

Preview features

  • [flake8-simplify] Extend open-file-with-context-handler to work with other standard-library IO modules (SIM115) (#12959)
  • [ruff] Avoid unused-async for functions with FastAPI route decorator (RUF029) (#12938)
  • [ruff] Ignore fstring-missing-syntax (RUF027) for fastAPI paths (#12939)
  • [ruff] Implement check for Decimal called with a float literal (RUF032) (#12909)

Rule changes

  • [flake8-bugbear] Update diagnostic message when expression is at the end of function (B015) (#12944)
  • [flake8-pyi] Skip type annotations in string-or-bytes-too-long (PYI053) (#13002)
  • [flake8-type-checking] Always recognise relative imports as first-party (#12994)
  • [flake8-unused-arguments] Ignore unused arguments on stub functions (ARG001) (#12966)
  • [pylint] Ignore augmented assignment for self-cls-assignment (PLW0642) (#12957)

Server

  • Show full context in error log messages (#13029)

Bug fixes

  • [pep8-naming] Don't flag from imports following conventional import names (N817) (#12946)
  • [pylint] - Allow __new__ methods to have cls as their first argument even if decorated with @staticmethod for bad-staticmethod-argument (PLW0211) (#12958)

Documentation

... (truncated)

Commits
  • ee258ca Bump version to 0.6.3 (#13152)
  • b4d9d26 Update faq.md to highlight changes to src (#13145)
  • a998320 [ruff] - extend comment deletions for unused-noqa (RUF100) (#13105)
  • 770ef2a [red-knot] support deferred evaluation of type expressions (#13131)
  • c6023c0 [red-knot] Add docs on using RAYON_NUM_THREADS for better logging (#13140)
  • df694ca [FastAPI] Avoid introducing invalid syntax in fix for `fast-api-non-annotat...
  • 2e75cfb Format PYI examples in docs as .pyi-file snippets (#13116)
  • cfafaa7 [red-knot] Remove very noisy tracing call when resolving ImportFrom stateme...
  • 3e9c7ad Replace crates by dependi for VS Code Dev Container (#13125)
  • 81cd438 red-knot: infer and display ellipsis type (#13124)
  • Additional commits viewable in compare view

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Bumps the python-dependencies group with 7 updates:

| Package | From | To |
| --- | --- | --- |
| [pyyaml](https://github.com/yaml/pyyaml) | `6.0.1` | `6.0.2` |
| [netcdf4](https://github.com/Unidata/netcdf4-python) | `1.7.1.post1` | `1.7.1.post2` |
| [couchbase](https://github.com/couchbase/couchbase-python-client) | `4.3.0` | `4.3.1` |
| [numpy](https://github.com/numpy/numpy) | `2.0.1` | `2.1.0` |
| [metpy](https://github.com/Unidata/MetPy) | `1.6.2` | `1.6.3` |
| [types-pyyaml](https://github.com/python/typeshed) | `6.0.12.20240724` | `6.0.12.20240808` |
| [ruff](https://github.com/astral-sh/ruff) | `0.5.6` | `0.6.3` |


Updates `pyyaml` from 6.0.1 to 6.0.2
- [Release notes](https://github.com/yaml/pyyaml/releases)
- [Changelog](https://github.com/yaml/pyyaml/blob/main/CHANGES)
- [Commits](yaml/pyyaml@6.0.1...6.0.2)

Updates `netcdf4` from 1.7.1.post1 to 1.7.1.post2
- [Release notes](https://github.com/Unidata/netcdf4-python/releases)
- [Changelog](https://github.com/Unidata/netcdf4-python/blob/master/Changelog)
- [Commits](Unidata/netcdf4-python@v1.7.1.post1...v1.7.1.post2)

Updates `couchbase` from 4.3.0 to 4.3.1
- [Commits](couchbase/couchbase-python-client@4.3.0...4.3.1)

Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)

Updates `metpy` from 1.6.2 to 1.6.3
- [Release notes](https://github.com/Unidata/MetPy/releases)
- [Commits](Unidata/MetPy@v1.6.2...v1.6.3)

Updates `types-pyyaml` from 6.0.12.20240724 to 6.0.12.20240808
- [Commits](https://github.com/python/typeshed/commits)

Updates `ruff` from 0.5.6 to 0.6.3
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.5.6...0.6.3)

---
updated-dependencies:
- dependency-name: pyyaml
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: netcdf4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: couchbase
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: metpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: types-pyyaml
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Sep 1, 2024
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github-actions bot commented Sep 3, 2024

Code Coverage

Package Line Rate Branch Rate Health
vxingest 33% 38%
vxingest.builder_common 27% 15%
vxingest.ctc_to_cb 12% 1%
vxingest.grib2_to_cb 13% 1%
vxingest.netcdf_to_cb 13% 1%
vxingest.partial_sums_to_cb 12% 1%
vxingest.utilities 30% 32%
Summary 16% (490 / 3033) 6% (40 / 712)

@ian-noaa ian-noaa merged commit 7aa99db into main Sep 3, 2024
7 checks passed
@ian-noaa ian-noaa deleted the dependabot-pip-python-dependencies-a0af0b6ead branch September 3, 2024 21:26
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