fix test_io for reading

.github/workflows/regtest_gnu.yml

@@ -0,0 +1,125 @@
+name: regtest_gnu
+on: [push, pull_request, workflow_dispatch]
+
+# Cancel in-progress workflows when pushing to a branch
+concurrency:
+ group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+ cancel-in-progress: true
+
+env:
+ cache_key: gnu11-1
+ CC: gcc-10
+ FC: gfortran-10
+ CXX: g++-10
+
+
+# Split into a steup step, and a WW3 build step which
+# builds multiple switches in a matrix. The setup is run once and
+# the environment is cached so each build of WW3 can share the dependencies.
+
+jobs:
+ setup:
+ runs-on: ubuntu-latest
+
+ steps:
+ - name: checkout-ww3
+ if: steps.cache-env.outputs.cache-hit != 'true'
+ uses: actions/checkout@v3
+ with:
+ path: ww3
+ # Cache spack, OASIS, and compiler
+ # No way to flush Action cache, so key may have # appended
+ - name: cache-env
+ id: cache-env
+ uses: actions/cache@v3
+ with:
+ path: |
+ spack
+ ~/.spack
+ work_oasis3-mct
+ key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }}
+
+ # Build WW3 spack environment
+ - name: install-dependencies-with-spack
+ if: steps.cache-env.outputs.cache-hit != 'true'
+ run: |
+ # Install NetCDF, ESMF, g2, etc using Spack
+ sudo apt install cmake
+ git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git
+ source spack/share/spack/setup-env.sh
+ spack env create ww3-gnu ww3/model/ci/spack_gnu.yaml
+ spack env activate ww3-gnu
+ spack compiler find
+ spack external find cmake
+ spack add [email protected]
+ spack concretize
+ spack install --dirty -v
+
+ - name: build-oasis
+ if: steps.cache-env.outputs.cache-hit != 'true'
+ run: |
+ source spack/share/spack/setup-env.sh
+ spack env activate ww3-gnu
+ export WWATCH3_DIR=${GITHUB_WORKSPACE}/ww3/model
+ export OASIS_INPUT_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/oasis3-mct
+ export OASIS_WORK_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct
+ cd ww3/regtests/ww3_tp2.14/input/oasis3-mct/util/make_dir
+ cmake .
+ make VERBOSE=1
+ cp -r ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct ${GITHUB_WORKSPACE}
+
+ regtest_gnu:
+ needs: setup
+ runs-on: ubuntu-latest
+
+ steps:
+ - name: install-dependencies
+ run: |
+ sudo apt-get update
+ sudo apt-get install doxygen gcovr valgrind
+
+ - name: checkout-ww3
+ uses: actions/checkout@v3
+ with:
+ path: ww3
+
+ - name: cache-env
+ id: cache-env
+ uses: actions/cache@v3
+ with:
+ path: |
+ spack
+ ~/.spack
+ work_oasis3-mct
+ key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }}
+
+ - name: build-ww3
+ run: |
+ source spack/share/spack/setup-env.sh
+ spack env activate ww3-gnu
+ set -x
+ cd ww3
+ export CC=mpicc
+ export FC=mpif90
+ export OASISDIR=${GITHUB_WORKSPACE}/work_oasis3-mct
+ mkdir build && cd build
+ export LD_LIBRARY_PATH="/home/runner/work/WW3/WW3/spack/var/spack/environments/ww3-gnu/.spack-env/view/:$LD_LIBRARY_PATH"
+ cmake -DSWITCH=${GITHUB_WORKSPACE}/ww3/regtests/unittests/data/switch.io -DCMAKE_BUILD_TYPE=Debug ..
+ make -j2 VERBOSE=1
+ ${GITHUB_WORKSPACE}/ww3/model/bin/ww3_from_ftp.sh 
+ cd ${GITHUB_WORKSPACE}/ww3/regtests
+ ./bin/run_cmake_test -o all -S -T -s PR1_MPI -w work_PR1_MPI -f -p mpirun -n 24 ../model ww3_tp2.5
+ cd ww3_tp2.5
+ ls -l
+ cd work_PR1_MPI
+ pwd
+ ls -l
+ ncdump -h out_pnt.ww3.nc > ncdump_out.txt
+ cat ncdump_out.txt
+ pwd
+ cat ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.5/out_pnt_ncdump.txt
+ cmp ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.5/out_pnt_ncdump.txt ncdump_out.txt 
+
+
+
+