Merge pull request #45 from NLeSC/44-ci-to-github-actions

add CI github action (refs #44)

.github/workflows/python-package.yml

@@ -0,0 +1,71 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: CI Build
+
+on:
+  push:
+  pull_request:
+    types: [opened, reopened]
+
+jobs:
+  first_check:
+    name: first code check / python-3.8 / ubuntu-latest
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python
+        uses: actions/setup-python@v1
+        with:
+          python-version: 3.8
+      - name: Python info
+        run: |
+          which python
+          python --version
+      - name: Install dependiencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install mcfly prospector nose pandas
+      - name: Show pip list
+        run: |
+          pip list
+      - name: Check style against standards using prospector (only warn for now, but never fail)
+        shell: bash -l {0}
+        run: prospector --profile linter_profile -o grouped -o pylint:pylint-report.txt --zero-exit
+      - name: Run unit tests
+        run: |
+          nosetests
+          
+  basic_checks:
+    name: Run tests across OS and versions / python-${{ matrix.python-version }} / ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    needs: first_check
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
+        python-version: ['3.6', '3.7', '3.8']
+        exclude:
+          # already tested in first_check job
+          - python-version: 3.8
+            os: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Python info
+        run: |
+          which python
+          python --version
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install mcfly prospector nose pandas
+      - name: Show pip list
+        run: |
+          pip list
+      - name: Run unit tests
+        run: |
+          nosetests

README.md

@@ -2,7 +2,7 @@
   <img src="mcflylogo.png" width="200"/>
 </p>
 
-[![Build Status](https://travis-ci.org/NLeSC/mcfly-tutorial.svg?branch=master)](https://travis-ci.org/NLeSC/mcfly-tutorial)
+[![CI Build](https://github.com/NLeSC/mcfly-tutorial/workflows/CI%20Build/badge.svg)](https://github.com/NLeSC/mcfly-tutorial/actions)
 
 This repository contains notebooks that show how to use the [mcfly](https://github.com/NLeSC/mcfly) software. Mcfly is deep learning tool for time series classification..
 

linter_profile.yaml

@@ -0,0 +1,21 @@
+output-format: json
+
+strictness: medium
+test-warnings: true
+doc-warnings: false
+
+pylint:
+  disable:
+    - wrong-import-position
+    - redefined-builtin
+    - bare-except
+    - unused-argument
+    - dangerous-default-value
+    - too-many-branches
+    - too-many-arguments
+    - too-many-locals
+    - protected-access
+
+pep8:
+  disable:
+    - E722