Allows for lots of operations for Panelapp queries
pip install panelappfrom panelapp import Panelapp
from panelapp import api
from panelapp import queriesfrom panelapp import Panelapp
panel = Panelapp.Panel(269) # Create panel object, confidence level defaults to 3, version is the lastest
panel.get_info() # Return dict with general data about the panel
# For the 4 following methods you can specify the confidence levels
panel.get_genes() # Return all the gene symbols/ids
panel.get_gene_symbols() # Return gene symbols according to confidence level choosen when creating the panel object
panel.get_hgnc_ids() # Return hgnc ids according to confidence level choosen when creating the panel object
panel.get_ensembl_ids("GRCh37") # Return ensembl ids according to confidence level choosen when creating the panel object
panel.update_version("3.2", "2") # Update the panel with version and confidence level given
panel.is_signedoff() # Return date of signedoff or False if not signedoff
panel.get_data() # Return all the data the API sent, you can use that there's something that is lacking in my methods
panel.write() # Write a file for the panel containing the most important data (according to me at least, you can customize this yourself using the .get_data() method)
from panelapp import queries
panels = queries.get_all_panels() # Return dict {panel_id: Panelapp.Panel} of all panels in Panelapp
signedoff_panels = queries.get_all_signedoff_panels() # Return dict {panel_id: Panelapp.Panel} of signedoff panels. Note that this only returns the latest versions on public panels.
matches, differences = queries.compare_versions(Panelapp.Panel, "2.7") # Return tuple of match and differences between the given panel and another panel version
panel = queries.get_signedoff_panel(269) # Return panel object with latest signedoff version