Merge pull request #1150 from NFDI4Chem/update-doi-command

fix: update DataCite Meta data for unpublished projects

app/Console/Commands/UpdateDOI.php

@@ -0,0 +1,82 @@
+<?php
+
+namespace App\Console\Commands;
+
+use App\Models\Project;
+use App\Models\Study;
+use App\Services\DOI\DOIService;
+use Carbon\Carbon;
+use Illuminate\Console\Command;
+
+class UpdateDOI extends Command
+{
+ /**
+ * The name and signature of the console command.
+ *
+ * @var string
+ */
+ protected $signature = 'nmrxiv:update-projects-dois {operator?} {update-date?}';
+
+ /**
+ * The console command description.
+ *
+ * @var string
+ */
+ protected $description = 'Update DataCite DOI metadata of all the projects, studies, and datasets updated before or after a given date.';
+
+ /**
+ * The DOI service instance.
+ *
+ * @var \App\Services\DOI\DOIService
+ */
+ protected $doiService;
+
+ /**
+ * Create a new class instance.
+ *
+ * @return void
+ */
+ public function __construct(DOIService $doiService)
+ {
+ parent::__construct();
+
+ // Assign the DOI service instance
+ $this->doiService = $doiService;
+ }
+
+ /**
+ * Execute the console command.
+ */
+ public function handle()
+ {
+ // $operator takes values from
+ // {'>' : after a certain update date,
+ // '<' : before a certain update date,
+ // '=' : at a certain update date}
+ $operator = $this->argument('operator');
+ $date = $this->argument('update-date');
+ $date = $date ? Carbon::parse($date) : null;
+
+ // Fetch the projects and samples (studies) based on the date
+ $projects = $date ? Project::where('updated_at', $operator, $date)->get() : Project::all();
+ $studies = $date ? Study::where('updated_at', $operator, $date)->get() : Study::all();
+
+ // Cover all studies within or without projects
+ foreach ($studies as $study) {
+ echo $study->identifier."\r\n";
+ foreach ($study->datasets as $dataset) {
+ echo $dataset->identifier."\r\n";
+ $dataset->updateDOIMetadata($this->doiService);
+ $dataset->addRelatedIdentifiers($this->doiService);
+ }
+ $study->updateDOIMetadata($this->doiService);
+ $study->addRelatedIdentifiers($this->doiService);
+ }
+
+ foreach ($projects as $project) {
+ echo $project->identifier."\r\n";
+ $project->updateDOIMetadata($this->doiService);
+ $project->addRelatedIdentifiers($this->doiService);
+ }
+ }
+}