Update docker container, add Docker auto-build and test, update documentation for building with spack-stack #466
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| name: build_test_and_push_docker | ||
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| on: | ||
| push: | ||
| branches: | ||
| # Only build containers when pushing to main | ||
| - "main" | ||
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| env: | ||
| LATEST_TAG: dtcenter/ccpp-scm:latest | ||
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| jobs: | ||
| docker: | ||
| runs-on: ubuntu-22.04 | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - name: Set up QEMU | ||
| uses: docker/setup-qemu-action@v3 | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Login to Docker Hub | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| username: ${{ secrets.DOCKERHUB_USERNAME }} | ||
| password: ${{ secrets.DOCKERHUB_TOKEN }} | ||
| - name: Push latest tag | ||
| uses: docker/build-push-action@v5 | ||
| with: | ||
| context: . | ||
| file: docker/Dockerfile | ||
| platforms: linux/amd64,linux/arm64 | ||
| push: true | ||
| tags: ${{ env.LATEST_TAG }} |
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| name: CI test to build the CCPP-SCM on ubuntu v22.04 | ||
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| on: [pull_request,workflow_dispatch] | ||
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| jobs: | ||
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| name: build_test_and_push_docker | ||
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| on: [pull_request,workflow_dispatch] | ||
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| env: | ||
| TEST_TAG: dtcenter/ccpp-scm:test | ||
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| jobs: | ||
| docker: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - name: Set up QEMU | ||
| uses: docker/setup-qemu-action@v3 | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Build and export test tag | ||
| uses: docker/build-push-action@v5 | ||
| with: | ||
| context: . | ||
| file: docker/Dockerfile | ||
| load: true | ||
| tags: ${{ env.TEST_TAG }} | ||
| - name: Test | ||
| run: | | ||
| mkdir $HOME/output | ||
| chmod a+rw $HOME/output | ||
| docker run --rm -v $HOME/output:/home ${{ env.TEST_TAG }} ./run_scm.py -f ../../test/rt_test_cases.py --runtime_mult 0.1 -d |
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| FROM debian:12 | ||
| MAINTAINER Michael Kavulich <[email protected]> | ||
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| # Set up base OS environment | ||
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| RUN apt-get -y update | ||
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| # Get "essential" tools and libraries | ||
| RUN apt-get -y install build-essential \ | ||
| && apt-get -y install cmake curl git file gfortran-12 ksh m4 python3 tcsh time wget vim \ | ||
| && apt-get -y install libnetcdf-pnetcdf-19 libnetcdff7 libnetcdf-dev libnetcdff-dev libxml2 \ | ||
| && apt-get -y install python3-pip python3.11-venv | ||
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| MAINTAINER Grant Firl <[email protected]> or Michael Kavulich <[email protected]> | ||
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| #Compiler environment variables | ||
| ENV CC /usr/bin/gcc | ||
| ENV FC /usr/bin/gfortran | ||
| ENV CXX /usr/bin/g++ | ||
| ENV F77 /usr/bin/gfortran | ||
| ENV F90 /usr/bin/gfortran | ||
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| # Other necessary environment variables | ||
| ENV LD_LIBRARY_PATH /usr/lib/ | ||
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| # Set up unpriviledged user account, set up user home space and make sure user has permissions on all stuff in /comsoftware | ||
| RUN groupadd comusers -g 9999 \ | ||
| && useradd -u 9999 -g comusers -M -s /bin/bash -c "Unpriviledged user account" -d /home comuser \ | ||
| && mkdir /comsoftware \ | ||
| && chown -R comuser:comusers /home \ | ||
| && chmod 6755 /home \ | ||
| && chown -R comuser:comusers /comsoftware \ | ||
| && chmod -R 6755 /comsoftware | ||
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| # Link version-specific aliases (python3 will be created later with virtual environment) | ||
| RUN ln -s ~comuser/.venv/bin/python3 /usr/local/bin/python | ||
| RUN ln -s /usr/bin/gfortran-12 /usr/bin/gfortran | ||
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| # all root steps completed above, now continue below as regular userID comuser | ||
| USER comuser | ||
| WORKDIR /home | ||
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| # Build NCEP libraries we need for SCM | ||
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| ENV NCEPLIBS_DIR /comsoftware/nceplibs | ||
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| RUN mkdir -p $NCEPLIBS_DIR/src && cd $NCEPLIBS_DIR/src \ | ||
| && git clone -b v2.4.1 --recursive https://github.com/NOAA-EMC/NCEPLIBS-bacio \ | ||
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| && mkdir NCEPLIBS-bacio/build && cd NCEPLIBS-bacio/build \ | ||
| && cmake -DCMAKE_INSTALL_PREFIX=$NCEPLIBS_DIR .. \ | ||
| && make VERBOSE=1 \ | ||
| && make install | ||
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| RUN cd $NCEPLIBS_DIR/src \ | ||
| && git clone -b v2.3.3 --recursive https://github.com/NOAA-EMC/NCEPLIBS-sp \ | ||
| && mkdir NCEPLIBS-sp/build && cd NCEPLIBS-sp/build \ | ||
| && cmake -DCMAKE_INSTALL_PREFIX=$NCEPLIBS_DIR .. \ | ||
| && make VERBOSE=1 \ | ||
| && make install | ||
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| RUN cd $NCEPLIBS_DIR/src \ | ||
| && git clone -b v2.11.0 --recursive https://github.com/NOAA-EMC/NCEPLIBS-w3emc \ | ||
| && mkdir NCEPLIBS-w3emc/build && cd NCEPLIBS-w3emc/build \ | ||
| && cmake -DCMAKE_INSTALL_PREFIX=$NCEPLIBS_DIR .. \ | ||
| && make VERBOSE=1 \ | ||
| && make install | ||
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| ENV bacio_ROOT /comsoftware/nceplibs | ||
| ENV sp_ROOT /comsoftware/nceplibs | ||
| ENV w3emc_ROOT /comsoftware/nceplibs | ||
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| # Obtain CCPP SCM source code and static data, build code | ||
| RUN cd /comsoftware \ | ||
| && git clone --recursive -b main https://github.com/NCAR/ccpp-scm \ | ||
| && cd /comsoftware/ccpp-scm/ \ | ||
| && ./contrib/get_all_static_data.sh \ | ||
| && ./contrib/get_thompson_tables.sh \ | ||
| && cd /comsoftware/ccpp-scm/scm \ | ||
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| && mkdir bin \ | ||
| && cd bin \ | ||
| && cmake ../src \ | ||
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@@ -67,3 +93,12 @@ RUN cd /comsoftware/ccpp-scm/scm \ | |
| WORKDIR /comsoftware/ccpp-scm/scm/bin | ||
| ENV SCM_WORK=/comsoftware | ||
| ENV SCM_ROOT=/comsoftware/ccpp-scm/ | ||
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| # For interactive use, vim mouse settings are infuriating | ||
| RUN echo "set mouse=" > ~/.vimrc | ||
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| # Set up python virtual environment and install needed packages | ||
| ENV VIRTUAL_ENV=~/.venv | ||
| RUN python3 -m venv $VIRTUAL_ENV | ||
| ENV PATH="$VIRTUAL_ENV/bin:$PATH" | ||
| RUN pip3 install f90nml==1.4.4 netcdf4==1.6.5 | ||
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Should we name this file Dockerfile_GNU or Dockerfile_GNUv12? Just in case we get an Intel one soon.
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Good point; do you think there is a possibility that Intel might be doable? Last time I worked with Docker (a few years ago) Intel was very difficult to get working in containers.
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JCSDA uses Intel in Docker all the time. The only issue is that you can't distribute the containers to the public.
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Ahh, okay that's good to know. If we do implement containers for testing we'll need a place to push them other than Dockerhub anyway, so it sounds like this may work.