Merge pull request #30 from rasools/OMICSINT_H24

Omicsint h24
NBISweden · Aug 28, 2024 · bbcc426 · bbcc426
2 parents 3f628b0 + e70afcb
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diff --git a/.vscode/extensions.json b/.vscode/extensions.json
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+{
+    "recommendations": [
+        "bogem.bogems-night-owl"
+    ]
+}
diff --git a/docker/Dockerfile_jupyter b/docker/Dockerfile_jupyter
diff --git a/docker/Dockerfile_rstudio b/docker/Dockerfile_rstudio
diff --git a/docker/docker-compose.yml b/docker/docker-compose.yml
diff --git a/docker/environment_jupyter.yml b/docker/environment_jupyter.yml
diff --git a/img/conda_illustration.png b/img/conda_illustration.png
diff --git a/notes.sh b/notes.sh
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+docker build --platform=linux/amd64 -t docker.io/rasoolsnbis/omicsint_h24:session_gems-1.0.0 -f "session_gems/Dockerfile" "session_gems/"
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+
+
+Labs:
+- In the Supervised omics integration lab I generated the docker with its relevant conda env activated within the docker and hosted the docker on scilifelab serve project, but in line 188 of notebook it returns an error, which I couldn’t initially figure it out what is the source of it.
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+- Session meta lab is problematic for making the required env.
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+- Session topology lab is running well, but code chunk 21 is problematic, which I couldn’t figure out what is the source of it. 
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+- GEMs session lab, not all the notebooks run properly, we need to check them and fix them.