Merge pull request #195 from rasools/OMICSINT_H24

Update single cell lab
NBISweden · Oct 1, 2024 · b201b77 · b201b77
2 parents 95bc009 + 1ff28f7
commit b201b77
Showing 1 changed file with 8 additions and 3 deletions.
diff --git a/session_ml/SingleCell/Dockerfile b/session_ml/SingleCell/Dockerfile
@@ -72,10 +72,15 @@ RUN apt-get update \
     && apt-get install -y --no-install-recommends \
        gnupg2 \
        dirmngr \
+       software-properties-common \
     && mkdir -p /etc/apt/keyrings \
-    && curl -fsSL https://cloud.r-project.org/bin/linux/ubuntu/jammy-cran40.key | gpg --dearmor -o /etc/apt/keyrings/r-project.gpg \
-    && echo "deb [signed-by=/etc/apt/keyrings/r-project.gpg] https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/" | tee /etc/apt/sources.list.d/r-project.list \
-    && apt-get update \
+    && curl -fsSL https://cloud.r-project.org/bin/linux/ubuntu/jammy-cran40.key | gpg --dearmor -o /etc/apt/keyrings/r-project.gpg
+
+# Add the R 4.4.x repository for Jammy
+RUN echo "deb [signed-by=/etc/apt/keyrings/r-project.gpg] https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/" | tee /etc/apt/sources.list.d/r-project.list
+
+# Update and install R
+RUN apt-get update \
     && apt-get install -y --no-install-recommends r-base \
     && apt-get clean \
     && rm -rf /var/lib/apt/lists/* \