Merge pull request #230 from rasools/OMICSINT_H24

Add instruction for using s-serve

.gitignore

@@ -19,5 +19,6 @@ session_ml/SingleCell/lab/data
 cplex_studio2211.linux_x86_64.bin
 install.properties
 
-# ignore .pptx files
-*.pptx
+# ignore .pptx and .docx files
+*.pptx
+*.docx

precourse.html

@@ -65,6 +65,7 @@ <h4 class="anchored" data-anchor-id="registration-on-scilifelab-serve"><img bord
 <hr>
 <p>In order to be able to access the lab notebooks for this course you need to have access to <a href="https://serve.scilifelab.se">SciLifeLab Serve</a>.</p>
 <p>Please register with your university email address. In the registration form there is a field called “Do you require support?”, in here please write that you are registering to take part in the course OMICSINT_H24. Do not forget to also confirm your e-mail address by clicking on a link in the activation email. This needs to be done before Friday October 11 so that the SciLifeLab Serve admins can set up your account in the way that is required by the course.</p>
+<p>For lunching practicals please follow the instructions <a href="./session_intro/Instructions%20for%20course%20OMICSINT_H24.pdf">here</a>.</p>
 </section>
 <section id="preparation-for-the-tutorial" class="level4">
 <h4 class="anchored" data-anchor-id="preparation-for-the-tutorial"><img border="0" src="https://www.svgrepo.com/show/26916/book.svg" width="15" height="15"> Preparation for the tutorial</h4>

precourse.md

@@ -10,6 +10,8 @@ In order to be able to access the lab notebooks for this course you need to have
 
 Please register with your university email address. In the registration form there is a field called “Do you require support?”, in here please write that you are registering to take part in the course OMICSINT_H24. Do not forget to also confirm your e-mail address by clicking on a link in the activation email. This needs to be done before Friday October 11 so that the SciLifeLab Serve admins can set up your account in the way that is required by the course.
 
+For lunching practicals please follow the instructions [here](./session_intro/Instructions for course OMICSINT_H24.pdf).
+
 #### <img border="0" src="https://www.svgrepo.com/show/26916/book.svg" width="15" height="15"> Preparation for the tutorial
 ***
 

schedule.html

@@ -62,7 +62,7 @@ <h1 class="title">Schedule - Omics integration and systems biology - 2024</h1>
 
 <section id="before-the-course" class="level4">
 <h4 class="anchored" data-anchor-id="before-the-course">Before the course</h4>
-<p><strong>Prepare</strong> <a href="./precourse.md">Pre-course materials</a> and pre-processing introduction (<a href="./session_preprocessing/preprocessing.ipynb">notebook</a>, <a href="./session_preprocessing/preprocessing.html">html</a>). <br> <br></p>
+<p><strong>Prepare</strong> <a href="https://nbisweden.github.io/workshop_omics_integration/precourse.html">Pre-course materials</a>. In order to be able to access the lab notebooks for this course you need to have access to <a href="https://serve.scilifelab.se">SciLifeLab Serve</a>. For lunching practicals please follow the instructions <a href="./session_intro/Instructions%20for%20course%20OMICSINT_H24.pdf">here</a>.</p>
 </section>
 <section id="course-schedule" class="level4">
 <h4 class="anchored" data-anchor-id="course-schedule"><img border="0" src="https://www.svgrepo.com/show/20800/event-date-and-time-symbol.svg" width="25" height="25"> Course schedule</h4>
@@ -369,7 +369,7 @@ <h5 class="anchored" data-anchor-id="day-4">Day 4</h5>
 </summary>
 <ul>
 <li>
-<a href="./session_gems/MetabModel_JLR_distrib.pdf">Introduction</a>
+<a href="./session_gems/GEMs_concept.pdf">Introduction – Constraint-based modeling concept</a>
 </li>
 <li>
 <a href="./session_gems/Constraint-based-modeling-ELIXIR-Omics-Integration-and-Systems-Biology.pdf">Tools</a>

schedule.md

@@ -5,9 +5,7 @@ title:  'Schedule - Omics integration and systems biology - 2024'
 
 #### Before the course
 
-**Prepare** [Pre-course materials](./precourse.md) and pre-processing introduction ([notebook](./session_preprocessing/preprocessing.ipynb), [html](./session_preprocessing/preprocessing.html)).
-<br>
-<br>
+**Prepare** [Pre-course materials](https://nbisweden.github.io/workshop_omics_integration/precourse.html). In order to be able to access the lab notebooks for this course you need to have access to [SciLifeLab Serve](https://serve.scilifelab.se). For lunching practicals please follow the instructions [here](./session_intro/Instructions for course OMICSINT_H24.pdf).
 
 #### <img border="0" src="https://www.svgrepo.com/show/20800/event-date-and-time-symbol.svg" width="25" height="25"> Course schedule