Merge pull request #213 from rasools/OMICSINT_H24

Update toplogy lab

.github/workflows/Build and Push Docker Images for Labs.yml

@@ -12,6 +12,7 @@ on:
       - 'session_ml/UMAP_DataIntegration/**'
       - 'session_gems/**'
       - 'session_gsa/**'
+      - 'session_toplogy/**'
     branches:
       - OMICSINT_H24
 
@@ -81,6 +82,9 @@ jobs:
           if git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep -q '^session_gsa'; then
             echo "gsa=true" >> $GITHUB_ENV
           fi
+          if git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep -q '^session_topology'; then
+            echo "topology=true" >> $GITHUB_ENV
+          fi
 
       # Conditionally build and push images for Deep Learning Lab
       - name: Build and Push Docker Image for Deep Learning Lab
@@ -195,4 +199,18 @@ jobs:
           tags: |
             docker.io/rasoolsnbis/omicsint_h24:session_gsa_amd_v.h24.${{ env.SHORT_SHA }}
             ghcr.io/nbisweden/omicsint_h24:session_gsa_amd_v.h24.${{ env.SHORT_SHA }}
+          
+      # Conditionally build and push images for Topology lab
+      - name: Build and Push Docker Image for Topology Lab
+        if: env.topology == 'true'
+        uses: docker/build-push-action@v4
+        with:
+          context: ./session_topology
+          file: session_topology/Dockerfile
+          platforms: linux/amd64
+          push: true
+          no-cache: true
+          tags: |
+            docker.io/rasoolsnbis/omicsint_h24:session_topology_amd_v.h24.${{ env.SHORT_SHA }}
+            ghcr.io/nbisweden/omicsint_h24:session_topology_amd_v.h24.${{ env.SHORT_SHA }}
       

session_topology/Dockerfile

@@ -49,4 +49,4 @@ RUN jupyter notebook --generate-config && \
     echo "c.NotebookApp.open_browser = False" >> /home/jovyan/.jupyter/jupyter_notebook_config.py
 
 # Set the startup script as the entrypoint
-ENTRYPOINT ["/usr/local/bin/start-script.sh"]
+ENTRYPOINT ["/usr/local/bin/start-script.sh"]