Merge pull request #139 from rasools/OMICSINT_H24

Add updated supervised lab
NBISweden · Sep 25, 2024 · 2ea1aed · 2ea1aed
2 parents 7a1a53b + 89d7048
commit 2ea1aed
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Showing 2 changed files with 11 additions and 11 deletions.
diff --git a/.github/workflows/Build and Push Docker Images for Labs.yml b/.github/workflows/Build and Push Docker Images for Labs.yml
@@ -6,7 +6,7 @@ on:
       - 'session_ml/DeepLearningDataIntegration/**'
       - 'session_ml/FeatureSelectionIntegrOMICs/**'
       - 'session_ml/SingleCell/**'
-      - 'session_ml/SupervisedLearningDataIntegration/**'
+      - 'session_ml/SupervisedOMICsIntegration/**'
       - 'session_ml/UnsupervisedOMICsIntegration/**'
       - 'session_ml/UMAP_DataIntegration/**'
       - 'session_gems/**'
@@ -64,8 +64,8 @@ jobs:
           if git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep -q '^session_ml/UMAP_DataIntegration'; then
             echo "umap_data_integration=true" >> $GITHUB_ENV
           fi
-          if git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep -q '^session_ml/SupervisedLearningDataIntegration'; then
-            echo "supervised_learning_data_integration=true" >> $GITHUB_ENV
+          if git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep -q '^session_ml/SupervisedOMICsIntegration'; then
+            echo "supervised_omics_integration=true" >> $GITHUB_ENV
           fi
           if git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep -q '^session_ml/UnsupervisedOMICsIntegration'; then
             echo "unsupervised_omics_integration=true" >> $GITHUB_ENV
@@ -133,19 +133,19 @@ jobs:
             docker.io/rasoolsnbis/omicsint_h24:session_ml_umap_data_integration_amd_v.24.1
             ghcr.io/nbisweden/omicsint_h24:session_ml_umap_data_integration_amd_v.24.1
 
-      # Conditionally build and push images for Supervised Learning Data Integration Lab
-      - name: Build and Push Docker Image for Supervised Learning Data Integration Lab
-        if: env.supervised_learning_data_integration == 'true'
+      # Conditionally build and push images for Supervised OMICs Integration Lab
+      - name: Build and Push Docker Image for Supervised OMICs Integration Lab
+        if: env.supervised_omics_integration == 'true'
         uses: docker/build-push-action@v4
         with:
-          context: ./session_ml/SupervisedLearningDataIntegration
-          file: session_ml/SupervisedLearningDataIntegration/Dockerfile
+          context: ./session_ml/SupervisedOMICsIntegration
+          file: session_ml/SupervisedOMICsIntegration/Dockerfile
           platforms: linux/amd64
           push: true
           no-cache: true
           tags: |
-            docker.io/rasoolsnbis/omicsint_h24:session_ml_supervised_learning_data_integration_amd_v.24.1
-            ghcr.io/nbisweden/omicsint_h24:session_ml_supervised_learning_data_integration_amd_v.24.1
+            docker.io/rasoolsnbis/omicsint_h24:session_ml_supervised_omics_integration_amd_v.24.1
+            ghcr.io/nbisweden/omicsint_h24:session_ml_supervised_omics_integration_amd_v.24.1
 
       # Conditionally build and push images for Unsupervised OMICs Integration Lab
       - name: Build and Push Docker Image for Unsupervised OMICs Integration Lab

diff --git a/session_ml/SupervisedOMICsIntegration/Dockerfile b/session_ml/SupervisedOMICsIntegration/Dockerfile
@@ -135,4 +135,4 @@ RUN chown -R ${USER}:${GROUP} ${HOME}/${USER}/lab \
 USER ${USER}
 EXPOSE 8787
 
-ENTRYPOINT ["/etc/run.sh"]
+ENTRYPOINT ["/etc/run.sh"]