Moved serve_quarto.py to scripts/

NBISweden · Oct 25, 2024 · 735bd1f · 735bd1f
1 parent 6476194
commit 735bd1f
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/README.md b/README.md
@@ -83,7 +83,7 @@ You can use a Flask server to serve the site, and handle automatic rebuilding of
 
 ```bash
 # serve the site
-docker run --rm --platform linux/amd64 -u $(id -u):$(id -g) -v ${PWD}:/qmd -p 5000:5000  ghcr.io/nbisweden/workshop-ngsintro:latest python3 serve_quarto.py
+docker run --rm --platform linux/amd64 -u $(id -u):$(id -g) -v ${PWD}:/qmd -p 5000:5000  ghcr.io/nbisweden/workshop-ngsintro:latest python3 scripts/serve_quarto.py
 ```
 
 ## Test scripts

diff --git a/serve_quarto.py → scripts/serve_quarto.py b/serve_quarto.py → scripts/serve_quarto.py
@@ -16,7 +16,6 @@ def read_output_dir_from_quarto_yml(quarto_yml_path):
         quarto_config = yaml.safe_load(file)
     return quarto_config.get('project', {}).get('output-dir', 'default-output-folder')
 
-output_folder = read_output_dir_from_quarto_yml(quarto_yml_path)
 
 class QuartoHandler(FileSystemEventHandler):
     def __init__(self):
@@ -61,6 +60,6 @@ def serve_file(filename):
 
 
 if __name__ == '__main__':
-    output_folder = read_output_dir_from_quarto_yml(quarto_yml_path)  # Update the output folder on the startup
+    output_folder = "../" + read_output_dir_from_quarto_yml(quarto_yml_path)  # Update the output folder on the startup, adding ../ to account for this script being in scripts/
     app.run(host='0.0.0.0', port=5000, debug=True)