Update merge functional annotation args

NBISweden · Nov 8, 2023 · 78e68ad · 78e68ad
1 parent 30a8b14
commit 78e68ad
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/config/functional_annotation_modules.config b/config/functional_annotation_modules.config
@@ -27,8 +27,9 @@ process {
     }
     withName: 'MERGE_FUNCTIONAL_ANNOTATION' {
         ext.args = [
-            '-id NBIS',
-            '-pe 5'
+            "-id $params.merge_annotation_identifier",
+            '-pe 5',
+            params.use_pcds ? "--pcds" : ""
         ].join(' ').trim()
         publishDir = [
             [