This repository contains a collection of scripts used to edit the JSON side cars and TSV files in the Monash rs-PET-MR, which has been uploaded to OpenNeuro (https://openneuro.org/datasets/ds002898).
Cite this paper:
"Jamadar, S.D., Ward, P.G.D., Close, T.G., Fornito, F., Premaratne, M., O'Brien, K., Staeb, D., Chen, Z., Shah, N.J., Egan, G.F., 2020. 'Monash rsPET-MR'- Simultaneous BOLD-fMRI and constant infusion FDG-PET data of the resting human brain. Scientific Data, 7, 363.
demographics.csv: It contains the de-identified demographic information of all the subjects
scan-protocol.pdf: the scan protocol of the Siemens biograph mMR scanner (software version: B20P)
edit_bold_json.py: the script to add 'SliceTiming' information to the json sidecar
edit_json.py: the scrip to append extra metadata required by BIDS specification to a json sidecar
edit_pet_json.py: the script to add PET related meta data to the json sidecar, according to the PET BIDS specs.
PrepData_rsfPET_code.m: The script that applies a convolved spatial-temporal gaussian-weighted gradient operator to the PET data. The details can be seen in figure 5 of the paper (https://www.nature.com/articles/s41597-020-00699-5)