MitoCarta

The goal of {MitoCarta} is to provide a better interaction with three data frames that can be found in the original MitoCarta. Each data frame corresponds to a different kind of data:

Firstly, we have a dataframe called “A_Human_MitoCarta3,” which helps us see all the genes present in human mitochondria.

Then we have another dataframe called “B_Human_All_Genes,” where we can find all the genes present in the human genome.

Finally, we also have a dataframe called “C_MitoPathways” containing all the pathways present in the mitochondria.

Installation

You can install the package {MitoCarta} from GitHub.

Make sure you have the {remotes} package installed:

install.packages('remotes')

Now you can install {MitoCarta} from GitHub with:

remotes::install_github("MitoProfiles/MitoCarta")

Using the Dataframes

To learn more about what is contained in each dataframe in {MitoCarta}, use the following command in your R console:

# Access to the hepl page of the package
?mitocarta::mitocarta_data

To run one of the dataframes included in {MitoCarta} use the command:

# to run the dataframe with all mitochondria genes
mitocarta::mitocarta_data$A_Human_MitoCarta3

# to run the dataframe with human genome
mitocarta::mitocarta_data$B_Human_All_Genes

# to run the daaframe with mitochondria pathways
mitocarta::mitocarta_data$C_MitoPathways

To analyze data from a specific column in a dataframe included in {MitoCarta}, simply add a “$” in front of the dataframe’s name. For example, to see what the column “Symbol” in the dataframe “A_Human_MitoCarta3” contains, use the following command:

# to run a specific column of a dataframe
mitocarta::mitocarta_data$A_Human_MitoCarta3$Symbol