GitHub - MikheyevLab/varroa-microbiome: Understanding the role of the microbiome for Varroa mites

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Understanding the role of the microbiome for Varroa mites

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Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
GOSemSim_Mantel_files/figure-html		GOSemSim_Mantel_files/figure-html
GO_enrichment_microbiome_output		GO_enrichment_microbiome_output
GO_enrichment_output		GO_enrichment_output
GOterm		GOterm
mondet		mondet
.DS_Store		.DS_Store
.gitignore		.gitignore
DE_varroa.Rmd		DE_varroa.Rmd
DE_varroa_microbiome.csv		DE_varroa_microbiome.csv
DE_varroa_mite.Rmd		DE_varroa_mite.Rmd
GOSEMSIM_matrix_microbiome_down.csv		GOSEMSIM_matrix_microbiome_down.csv
GOSEMSIM_matrix_microbiome_up.csv		GOSEMSIM_matrix_microbiome_up.csv
GOSEMSIM_matrix_mite_down.csv		GOSEMSIM_matrix_mite_down.csv
GOSEMSIM_matrix_mite_up.csv		GOSEMSIM_matrix_mite_up.csv
GOSemSim_Mantel.Rmd		GOSemSim_Mantel.Rmd
GOSemSim_Mantel.html		GOSemSim_Mantel.html
GOSemSim_down_regulated.R		GOSemSim_down_regulated.R
GOSemSim_miteVSmicrobiome.R		GOSemSim_miteVSmicrobiome.R
GOSemSim_plots.png		GOSemSim_plots.png
GOSemSim_table_miteVSmicrobiome.csv		GOSemSim_table_miteVSmicrobiome.csv
GOSemSim_up_regulated.R		GOSemSim_up_regulated.R
GO_enrichment_Microbiome.R		GO_enrichment_Microbiome.R
GO_enrichment_analysis.Rmd		GO_enrichment_analysis.Rmd
GO_enrichment_comparison_mite.xlsx		GO_enrichment_comparison_mite.xlsx
GO_enrichment_loop.R		GO_enrichment_loop.R
IDrna_gene_map.csv		IDrna_gene_map.csv
Microbe_DEG_IDs.csv		Microbe_DEG_IDs.csv
Microbe_DEG_IDs.txt		Microbe_DEG_IDs.txt
NMDS.R		NMDS.R
PERMANOVA.R		PERMANOVA.R
Plots.Rmd		Plots.Rmd
Plots.nb.html		Plots.nb.html
Rplot01.png		Rplot01.png
all_sample_abundance.csv		all_sample_abundance.csv
aundance_calculate_from_kallisto.R		aundance_calculate_from_kallisto.R
contrasts_mite_life_stages.csv		contrasts_mite_life_stages.csv
gene_level_DE_analysis.Rmd		gene_level_DE_analysis.Rmd
genebank_gene_map.csv		genebank_gene_map.csv
host_country.png		host_country.png
mondet.Rmd		mondet.Rmd
samples.csv		samples.csv
varroa microbiome.Rproj		varroa microbiome.Rproj