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Phage lab

Binder

This is an interactive tutorial teaching the principles of next-generation data analysis using a re-sequencing experiment.

You can launch it by clicling on the "Launch Binder" badge above. This will launch Binder and build a virutal environment (takes a few minutes), after which you can interactively analyze data.

Alternatively, you can clone the repository and install the environment using the Miniconda package manager from within the repo folder.

conda install jupyter ipython
conda env create -f environment.yml
jupyter notebook

This should open the same environment, but locally.

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Analysis of an evolutionary experiment

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  • Jupyter Notebook 68.4%
  • CSS 31.6%