Create readme.md

tools/readme.md

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+# Tools used to sync and parse gff file
+
+### reformatting webapollo annotations to maker gff standart
+
+Reformatting gff to maker standarts. Column 9 starts with ID=. 
+Detailed specifications (see link)
+
+```python rename_apollo_gff.py -in apollo.gff -out apollo.mkr.gff```
+
+### updating old gff file using
+
+Synchronizing new and old annotations.gff. Reporting changes of feature names and checks for duplications.
+
+```python sync_gff.py -in apollo.mkr.gff -old old_annot.gff -out new_annot.gff```