Vignettes

Vignettes consisting of sample workflows, gluing different tools together for various purposes. Each workflow lives in its own directory.

• /pathway_analysis - pathway analysis - enrichment and visualization.
  • individual-kegg-maps.ipynb - how to GET individual KEGG pathway maps by KEGG pathway ID, with custom colours in user-selected nodes.
  • maca-pathview-workbook.ipynb - Example workflow with MetaboAnalyst and pathview.
• /vsn - exploring the use of variance-stabilizing normalization for normalization.