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Merge pull request #247 from MetaCell/feature/AREG-130
Feature/areg-130: Add new antibody status UNDER REVIEW
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19 changes: 19 additions & 0 deletions
19
applications/portal/backend/api/migrations/0011_alter_commercial_type_vendor.py
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,19 @@ | ||
| # Generated by Django 4.2.9 on 2024-04-21 11:30 | ||
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| from django.db import migrations, models | ||
| import django.db.models.deletion | ||
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| class Migration(migrations.Migration): | ||
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| dependencies = [ | ||
| ('api', '0010_auto_20240315_0451'), | ||
| ] | ||
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| operations = [ | ||
| migrations.AlterField( | ||
| model_name='vendor', | ||
| name='commercial_type', | ||
| field=models.CharField(choices=[('commercial', 'commercial'), ('personal', 'personal'), ('non-profit', 'non-profit'), ('other', 'other')], db_index=True, default='commercial', max_length=32, null=True), | ||
| ), | ||
| ] |
97 changes: 97 additions & 0 deletions
97
applications/portal/backend/api/migrations/0012_alter_status_field_antibody_vendordomain.py
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,97 @@ | ||
| # Generated by Django 4.2.9 on 2024-04-22 10:15 | ||
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| from django.db import migrations, models | ||
| import django.db.models.deletion | ||
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| class Migration(migrations.Migration): | ||
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| dependencies = [ | ||
| ('api', '0011_alter_commercial_type_vendor'), | ||
| ] | ||
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| operations = [ | ||
| # First need to drop the MATERIALIZED VIEW antibody_search; | ||
| migrations.RunSQL( | ||
| sql=""" | ||
| DROP MATERIALIZED VIEW IF EXISTS antibody_search; | ||
| """, | ||
| reverse_sql = """ | ||
| DROP MATERIALIZED VIEW antibody_search; | ||
| """ | ||
| ), | ||
| migrations.AlterField( | ||
| model_name='antibody', | ||
| name='status', | ||
| field=models.CharField(choices=[('CURATED', 'Curated'), ('REJECTED', 'Rejected'), ('QUEUE', 'Queued'), ('UNDER_REVIEW', 'Under Review')], db_index=True, default='QUEUE', max_length=12), | ||
| ), | ||
| migrations.AlterField( | ||
| model_name='vendordomain', | ||
| name='status', | ||
| field=models.CharField(choices=[('CURATED', 'Curated'), ('REJECTED', 'Rejected'), ('QUEUE', 'Queued'), ('UNDER_REVIEW', 'Under Review')], db_index=True, default='QUEUE', max_length=12), | ||
| ), | ||
| # CREATE THE MATERIALIZED VIEW AGAIN - antibody_search; | ||
| migrations.RunSQL( | ||
| sql=""" | ||
| DROP MATERIALIZED VIEW IF EXISTS antibody_search; | ||
| CREATE MATERIALIZED VIEW antibody_search AS | ||
| SELECT ix, | ||
| ( | ||
| setweight(to_tsvector('english'::regconfig, ((( | ||
| COALESCE(ab_name, ''::text) || ' '::text) || | ||
| COALESCE(clone_id, ''::text) || ' '::text)) | ||
| ), 'A'::"char") || | ||
| setweight(to_tsvector('english'::regconfig, ((((((((((((((((((((((((( | ||
| COALESCE(api_vendor.vendor, ''::text) || ' '::text) || | ||
| COALESCE(api_specie.name, ''::text) || ' '::text) || | ||
| COALESCE(target_subregion, ''::text) || ' '::text) || | ||
| COALESCE(clonality, ''::text)) || ' '::text) || | ||
| COALESCE(target_modification, ''::text)) || ' '::text) || | ||
| COALESCE(epitope, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(product_isotype, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(ab_target, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(ab_target_entrez_gid, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(uniprot_id, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(product_isotype, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(product_conjugate, ''::text) || | ||
| COALESCE(product_form, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(target_species_raw, ''::character varying)::text) || ' '::text) || | ||
| COALESCE(kit_contents, ''::character varying)::text) || ' '::text)), 'C'::"char") || | ||
| setweight(to_tsvector('english'::regconfig, ((( | ||
| COALESCE(comments, ''::text) || ' '::text) || | ||
| COALESCE(curator_comment, ''::text) || ' '::text)) | ||
| ), 'D'::"char") | ||
| ) AS search_vector, | ||
| CASE | ||
| WHEN api_antibody.defining_citation ~ '^[0-9,]+$' THEN CAST(SPLIT_PART(api_antibody.defining_citation, ',', 1) AS INTEGER) | ||
| ELSE 10000000 | ||
| END as defining_citation, | ||
| CASE | ||
| WHEN disc_date IS NOT NULL THEN 1 | ||
| ELSE 0 | ||
| END AS disc, | ||
| status | ||
| FROM api_antibody | ||
| LEFT JOIN api_vendor ON api_vendor.id = api_antibody.vendor_id | ||
| LEFT JOIN api_specie ON api_specie.id = api_antibody.source_organism_id | ||
| """, | ||
| reverse_sql = ''' | ||
| DROP MATERIALIZED VIEW antibody_search; | ||
| ''' | ||
| ), | ||
| migrations.RunSQL( | ||
| sql="""CREATE UNIQUE INDEX IF NOT EXISTS antibody_search_idx | ||
| ON antibody_search | ||
| (ix); | ||
| """, | ||
| ), | ||
| migrations.AddIndex( | ||
| model_name="antibodysearch", | ||
| index=django.contrib.postgres.indexes.GinIndex( | ||
| fields=["search_vector"], name="antibody_search_fts_idx" | ||
| ), | ||
| ) | ||
| ] | ||
|
|
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