extract events from the discharged_concept_id field of the visit table with the correct time #134
Workflow file for this run
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name: Run tests | |
on: | |
push: | |
branches: [ "main" ] | |
pull_request: | |
branches: [ "main" ] | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install flake8 pytest | |
- name: Install MEDS ETL | |
run: python -m pip install ".[cpp]" | |
- name: Download MIMIC-IV-Demo (v2.2) | |
run: | | |
# Download the MIMIC-IV-Demo dataset (v2.2) to a tests/data/ directory | |
wget -r -N -c --no-host-directories --cut-dirs=1 -np -P tests/data https://physionet.org/files/mimic-iv-demo/2.2/ | |
- name: Run tests | |
run: | | |
pytest -v |