MEDS 0.3 Release Candidate #35

	name: Run MEDS-ETL tests

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	jobs:
	build:

	runs-on: ubuntu-latest

	strategy:
	matrix:
	python-version: ["3.10"]

	steps:
	- uses: actions/checkout@v3

	# Clone the MEDS-ETL repository
	- name: Clone MEDS-ETL repository
	run: git clone https://github.com/Medical-Event-Data-Standard/meds_etl.git

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install flake8 pytest

	# Install MEDS-ETL
	- name: Install MEDS-ETL
	run: \|
	cd meds_etl
	python -m pip install .

	# Download MIMIC-IV-Demo (v2.2)
	- name: Download MIMIC-IV-Demo (v2.2)
	run: \|
	cd meds_etl
	wget -r -N -c --no-host-directories --cut-dirs=1 -np -P tests/data https://physionet.org/files/mimic-iv-demo/2.2/

	# Run MEDS-ETL tests
	- name: Run MEDS-ETL tests
	run: \|
	cd meds_etl
	pytest -v

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