fixed dependencies #48

	name: Test

	on:
	push:
	branches: [master]
	pull_request:
	branches: [master, devel]

	jobs:
	test:
	runs-on: ${{ matrix.os }}
	defaults:
	run:
	shell: bash -e {0} # -e to fail on error

	strategy:
	fail-fast: false
	matrix:
	python: ["3.8", "3.10"]
	os: [ubuntu-latest]

	env:
	OS: ${{ matrix.os }}
	PYTHON: ${{ matrix.python }}

	steps:
	- uses: actions/checkout@v2
	- uses: r-lib/actions/setup-r@v2
	- name: Set up Python ${{ matrix.python }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python }}

	- name: Get pip cache dir
	id: pip-cache-dir
	run: \|
	echo "::set-output name=dir::$(pip cache dir)"
	- name: Restore pip cache
	uses: actions/cache@v2
	with:
	path: ${{ steps.pip-cache-dir.outputs.dir }}
	key: pip-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('**/pyproject.toml') }}
	restore-keys: \|
	pip-${{ runner.os }}-${{ env.pythonLocation }}-
	- name: Install test dependencies
	run: \|
	python -m pip install --upgrade pip wheel
	pip install codecov
	- name: Install dependencies
	run: \|
	pip install ".[dev,test]"
	- name: Install R package dependencies
	run: \|
	Rscript --vanilla -e "install.packages(c('BiocManager', 'statmod'), repos='http://cran.us.r-project.org'); library('BiocManager'); BiocManager::install('edgeR')"
	- name: Test
	env:
	MPLBACKEND: agg
	PLATFORM: ${{ matrix.os }}
	DISPLAY: :42
	run: \|
	pytest -v --cov --color=yes
	- name: Upload coverage
	env:
	CODECOV_NAME: ${{ matrix.python }}-${{ matrix.os }}
	# run: \|
	# codecov --required --flags=unittests
	uses: codecov/codecov-action@v3
	with:
	token: ${{secrets.CODECOV_TOKEN}}

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