Skip to content

Code to handle dbsnp147 data used for local queries in PhenoScanner

Notifications You must be signed in to change notification settings

MarioGuCBMR/local_SNP_query_in_PhenoScanner

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

8 Commits
 
 
 
 

Repository files navigation

Local SNP query in PhenoScanner

Code to handle dbsnp147 data used for local queries in PhenoScanner

INTRODUCTION

This is a small repository to show how I handle the dbsnp147 data that PhenoScanner allowed me to have access to. The dbsnp147 data can only be obtained by asking PhenoScanner to give you a link to download it. This repository only shows the code to divide the data so that it can be queried easily in R and to query it to obtain chromosome, position and RSID from build 37.

That means that the original dbsnp147 data cannot be found in this repository and cannot be obtained by using this code, as agreed with PhenoScanner after obtaining it.

About

Code to handle dbsnp147 data used for local queries in PhenoScanner

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages