ensure values are always updated

directlfq/dashboard_parts.py

@@ -327,16 +327,17 @@ def create(self):
  self.run_pipeline_button.on_click(self.run_pipeline)
  return self.layout
 
+
  def run_pipeline(self, *args):
  self.run_pipeline_progress.active = True
- input_file = self.path_analysis_file.value
+ input_file = self.path_analysis_file.value_input
  input_type_to_use = self.dropdown_menu_for_input_type.value
- mq_protein_groups_txt = None if self.path_protein_groups_file.value == '' else self.path_protein_groups_file.value
- additional_headers = [] if self.additional_headers.value == '' else self.additional_headers.value
+ mq_protein_groups_txt = None if self.path_protein_groups_file.value_input == '' else self.path_protein_groups_file.value_input
+ additional_headers = [] if self.additional_headers.value_input == '' else self.additional_headers.value_input
  min_nonan = self.num_nonan_vals.value
- file_of_proteins_for_normalization = None if self.protein_subset_for_normalization_file.value == '' else self.protein_subset_for_normalization_file.value
+ file_of_proteins_for_normalization = None if self.protein_subset_for_normalization_file.value_input == '' else self.protein_subset_for_normalization_file.value_input
  num_cores = None if self.num_cores_vals.value == -1 else self.num_cores_vals.value
- yaml_filt_dict_path = None if self.yaml_filt_dict_path.value == '' else self.yaml_filt_dict_path.value
+ yaml_filt_dict_path = None if self.yaml_filt_dict_path.value_input == '' else self.yaml_filt_dict_path.value_input
  if isinstance(additional_headers, str): # The user will enter a string with semicolon-separated values
  additional_headers = additional_headers.split(';')
 
@@ -357,6 +358,7 @@ def run_pipeline(self, *args):
  self.run_pipeline_progress.active = False
 
 
+
 class Tabs(object):
 
  def __init__(self, pipeline):