fix order of calls

MannLabs · Apr 22, 2024 · 532c74b · 532c74b
1 parent eb7b23e
commit 532c74b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/directlfq/lfq_manager.py b/directlfq/lfq_manager.py
@@ -48,9 +48,9 @@ def run_lfq(input_file, columns_to_add = [], selected_proteins_file :str = None
  input_df = lfqutils.import_data(input_file=input_file, input_type_to_use=input_type_to_use, filter_dict=filter_dict)
 
  input_df = lfqutils.sort_input_df_by_protein_id(input_df)
+ input_df = lfqutils.remove_potential_quant_id_duplicates(input_df)
  input_df = lfqutils.index_and_log_transform_input_df(input_df)
  input_df = lfqutils.remove_allnan_rows_input_df(input_df)
- input_df = lfqutils.remove_potential_quant_id_duplicates(input_df)
 
  if not deactivate_normalization:
  LOGGER.info("Performing sample normalization.")