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MagpiePKU/README.md

Zhang, Yi

I and my colleagues develop computational and experimental tools for "molecular archaeology": these methods facilitate identifying and dating important molecular events in development, disease, and evolution.

Beijing 102206, China, People's Republic of | [email protected]


Education

Ph.D., Neuroscience Peking University (2010-2015)
B.Sc., Biological Sciences Peking University (2006-2010)


Selected Publication

  • Xiao Y*, Jin W*, Ju L*, Fu J*, Wang G, Yu MX, Chen FJ, Qian KY, Wang XH#, Zhang Y#. Tracking single-cell evolution using clock-like chromatin accessibility loci. Nat. Biotechnol. 2024 May 9; doi: 10.1038/s41587-024-02241-z.

  • Gong XL*, He W*, Jin W*, Ma HW*, Wang G*, Li JX*, Xiao Y, Zhao YY, Chen Q, Guo HH, Yang JX, Qi YM, Dong W, Fu M, Li XJ, Liu JS, Liu XH#, Yin AH#, Zhang Y#, Wei Y#. Disruption of maternal vascular remodeling by a fetal endoretrovirus-derived gene in preeclampsia. Genome Biol. 2024 May 7; 25:117.

  • Xiao Y*, Ju L*, Qian K*, Jin W*, Wang G, Zhao Y, Jiang W, Liu N, Wu K, Peng M, Cao R, Li S, Shi H, Gong Y, Zheng H, Liu T, Luo Y, Ma H, Chang L, Li G, Cao X, Tian Y, Xu Z, Yang Z, Shan L, Guo Z, Yao D, Zhou X, Chen X, Guo Z, Liu D, Xu S, Ji C, Yu F, Hong X, Luo J, Cao H, Zhang Y#, Wang X#. Non-invasive diagnosis and surveillance of bladder cancer with driver and passenger DNA methylation in a prospective cohort study. Clin Transl Med., 2022, 12(8):e1008.

  • Xue L*, He W*, Zhang Y*, Wang Z, Chen H, Chen Z, Zhu W, Liu D, Jia H, Jiang Y, Wang Z, Wu H. Origins of biallelic inactivation of NF2 in Neurofibromatosis Type 2. Neuro-Oncology, 2021, 24 (6), 903-913

  • Masuyama K, Zhang Y, Rao Y, Wang J. Mapping Neural Circuits with Activity-Dependent Nuclear Import of a Transcription Factor. Journal of Neurogenetics, 2011, 26(1):89-102.


All Publication

https://orcid.org/0000-0001-5388-1276

Pinned Loading

  1. EpiTrace EpiTrace Public

    Cell age determination by scATAC-seq and bulk-ATAC-seq

    R 28 3

  2. positiveSelectionPipeline positiveSelectionPipeline Public

    Random perl and shell scripts plus notes for whole genome CDS positive selection detection

    Perl 2 5