Add a task that plots WOA23 transects

For now, these are at the same locations as SOSE transects
MPAS-Dev · Nov 3, 2024 · c75aa10 · c75aa10
1 parent 396a63a
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diff --git a/docs/conf.py b/docs/conf.py
@@ -187,7 +187,7 @@
     'numpy': ('http://docs.scipy.org/doc/numpy/', None),
     'xarray': ('http://xarray.pydata.org/en/stable/', None),
     'geometric_features':
-        ('http://mpas-dev.github.io/geometric_features/stable/', None),
+        ('http://mpas-dev.github.io/geometric_features/main/', None),
     'mpas_tools':
         ('http://mpas-dev.github.io/MPAS-Tools/stable/', None)}
 

diff --git a/docs/developers_guide/api.rst b/docs/developers_guide/api.rst
@@ -73,12 +73,16 @@ Ocean tasks
    ClimatologyMapAntarcticMelt
    ClimatologyMapSose
    ClimatologyMapVel
+   ClimatologyMapWoa
    ClimatologyMapArgoTemperature
    ClimatologyMapArgoSalinity
    ClimatologyMapWaves
    IndexNino34
    MeridionalHeatTransport
    OceanHistogram
+   OceanRegionalProfiles
+   RegionalTSdiagrams
+   SoseTransects
    StreamfunctionMOC
    TimeSeriesOHCAnomaly
    TimeSeriesTemperatureAnomaly
@@ -87,6 +91,8 @@ Ocean tasks
    TimeSeriesAntarcticMelt
    TimeSeriesOceanRegions
    TimeSeriesTransport
+   WoaTransects
+   WoceTransects
 
 .. currentmodule:: mpas_analysis.ocean.compute_anomaly_subtask
 

diff --git a/docs/users_guide/analysis_tasks.rst b/docs/users_guide/analysis_tasks.rst
@@ -36,6 +36,7 @@ Analysis Tasks
    tasks/indexNino34
    tasks/woceTransects
    tasks/soseTransects
+   tasks/woaTransects
    tasks/geojsonTransects
    tasks/oceanRegionalProfiles
    tasks/regionalTSDiagrams

diff --git a/docs/users_guide/tasks/examples/woa23_transect.png b/docs/users_guide/tasks/examples/woa23_transect.png
diff --git a/docs/users_guide/tasks/woaTransects.rst b/docs/users_guide/tasks/woaTransects.rst
@@ -0,0 +1,191 @@
+.. |deg| unicode:: U+00B0 .. degree sign
+   :trim:
+
+.. _task_woaTransects:
+
+woaTransects
+============
+
+An analysis task for computing meridional transects of MPAS fields at evenly
+spaced latitudes around Antarctica and comparing them with results from the
+`World Ocean Atlas 2023 (WOA23)`_.
+
+Component and Tags::
+
+    component: ocean
+    tags: climatology, transect, woa, publicObs
+
+Configuration Options
+---------------------
+
+The following configuration options are available for this task::
+
+    [woaTransects]
+    ## options related to plotting model vs. World Ocean Atlas 2023 (WOA23)
+    ## transects.
+
+    # Times for comparison times (Jan, Feb, Mar, Apr, May, Jun, Jul, Aug, Sep, Oct,
+    # Nov, Dec, JFM, AMJ, JAS, OND, ANN)
+    seasons =  ['ANN', 'JFM', 'JAS']
+
+    # The approximate horizontal resolution (in km) of each transect.  Latitude/
+    # longitude between observation points will be subsampled at this interval.
+    # Use 'obs' to indicate no subsampling. Use 'mpas' to indicate plotting of
+    # model data on the native grid, in which case comparison with observations
+    # will take place on the observation grid.
+    #horizontalResolution = mpas
+    #horizontalResolution = obs
+    horizontalResolution = 5
+
+    # The name of the vertical comparison grid.  Valid values are 'mpas' for the
+    # MPAS vertical grid, 'obs' to use the locations of observations or
+    # any other name if the vertical grid is defined by 'verticalComparisonGrid'
+    #verticalComparisonGridName = mpas
+    #verticalComparisonGridName = obs
+    verticalComparisonGridName = uniform_10_to_1500m_at_10m
+
+    # The vertical comparison grid if 'verticalComparisonGridName' is not 'mpas' or
+    # 'obs'.  This should be numpy array of (typically negative) elevations (in m).
+    # The first and last entries are used as axis bounds for 'mpas' and 'obs'
+    # vertical comparison grids
+    verticalComparisonGrid = numpy.linspace(-10, -1500, 150)
+
+    # A range for the y axis (if any)
+    verticalBounds = []
+
+    # The minimum weight of a destination cell after remapping. Any cell with
+    # weights lower than this threshold will therefore be masked out.
+    renormalizationThreshold = 0.01
+
+    # min and max latitude of transects
+    minLat = -80
+    maxLat = -60
+
+    # longitudes of transects
+    # Default transects are at Filchner, Bellingshausen Sea, Thwaites, Ross, Totten,
+    # Amery, Fimbul
+    longitudes = [318., 280., 253., 187., 117., 75., 0.]
+
+    # a list of fields top plot for each transect.  All supported fields are listed
+    # below.
+    fieldList = ['temperature', 'salinity']
+
+
+    [woaTemperatureTransects]
+    ## options related to plotting WOA23 transects of potential temperature
+
+    # colormap for model/observations
+    colormapNameResult = RdYlBu_r
+    # whether the colormap is indexed or continuous
+    colormapTypeResult = continuous
+    # the type of norm used in the colormap
+    normTypeResult = linear
+    # A dictionary with keywords for the norm
+    normArgsResult = {'vmin': -2.0, 'vmax': 2.0}
+    # color indices into colormapName for filled contours
+    #colormapIndicesResult = [0, 40, 80, 110, 140, 170, 200, 230, 255]
+    # colormap levels/values for contour boundaries
+    #colorbarLevelsResult = [0, 0.25, 0.5, 0.75, 1, 2, 3, 4, 5, 6]
+    # place the ticks automatically by default
+    # colorbarTicksResult = numpy.linspace(0.0, 6.0, 9)
+    # contour line levels (use [] for automatic contour selection, 'none' for no
+    # contour lines)
+    #contourLevelsResult = np.arange(0.5, 6.0, 1.0)
+    contourLevelsResult = 'none'
+
+    # colormap for differences
+    colormapNameDifference = balance
+    # whether the colormap is indexed or continuous
+    colormapTypeDifference = continuous
+    # the type of norm used in the colormap
+    normTypeDifference = linear
+    # A dictionary with keywords for the norm
+    normArgsDifference = {'vmin': -2.0, 'vmax': 2.0}
+    # color indices into colormapName for filled contours
+    #colormapIndicesDifference = [0, 28, 57, 85, 113, 128, 128, 142, 170, 198, 227, 255]
+    # colormap levels/values for contour boundaries
+    #colorbarLevelsDifference = [-2, -1.5, -1.25, -1, -0.2, 0, 0.2, 1, 1.25, 1.5, 2]
+    # place the ticks automatically by default
+    # colorbarTicksDifference = numpy.linspace(-2.0, 2.0, 9)
+    # contour line levels (use [] for automatic contour selection, 'none' for no
+    # contour lines)
+    #contourLevelsDifference = np.arange(-1.8, 2.0, 0.4)
+    contourLevelsDifference = 'none'
+
+
+    [woaSalinityTransects]
+    ## options related to plotting WOA23 transects of salinity
+
+    # colormap for model/observations
+    colormapNameResult = haline
+    # whether the colormap is indexed or continuous
+    colormapTypeResult = continuous
+    # the type of norm used in the colormap
+    normTypeResult = linear
+    # A dictionary with keywords for the norm
+    normArgsResult = {'vmin': 33.8, 'vmax': 35.0}
+    # color indices into colormapName for filled contours
+    #colormapIndicesResult = [0, 40, 80, 110, 140, 170, 200, 230, 255]
+    # colormap levels/values for contour boundaries
+    #colorbarLevelsResult = [34, 34.3, 34.5, 34.65, 34.675, 34.7, 34.725, 34.75, 34.8, 35]
+    # place the ticks automatically by default
+    # colorbarTicksResult = numpy.linspace(34.0, 35.0, 9)
+    # contour line levels (use [] for automatic contour selection, 'none' for no
+    # contour lines)
+    #contourLevelsResult = np.arange(34.1, 35.0, 0.1)
+    contourLevelsResult = 'none'
+
+    # colormap for differences
+    colormapNameDifference = balance
+    # whether the colormap is indexed or continuous
+    colormapTypeDifference = continuous
+    # the type of norm used in the colormap
+    normTypeDifference = linear
+    # A dictionary with keywords for the norm
+    normArgsDifference = {'vmin': -0.5, 'vmax': 0.5}
+    # color indices into colormapName for filled contours
+    #colormapIndicesDifference = [0, 28, 57, 85, 113, 128, 128, 142, 170, 198, 227, 255]
+    # colormap levels/values for contour boundaries
+    #colorbarLevelsDifference = [-0.5, -0.2, -0.1, -0.05, -0.02, 0,  0.02, 0.05, 0.1, 0.2, 0.5]
+    # place the ticks automatically by default
+    # colorbarTicksDifference = numpy.linspace(-0.5, 0.5, 9)
+    # contour line levels (use [] for automatic contour selection, 'none' for no
+    # contour lines)
+    #contourLevelsDifference = numpy.linspace(-0.6, 0.6, 9)
+    contourLevelsDifference = 'none'
+
+
+The options ``minLat`` and ``maxLat`` determine the start and end of each
+meridional transect (in degrees).  The option ``longitudes`` is a list or
+numpy array of longitudes for each transect, e.g.::
+
+  longitudes = numpy.linspace(0, 330, 12)
+
+produces 12 transects spaced every 30 |deg|.
+
+The user can select only to plot a subset of the supported fields by adding
+only the desired field names to ``fieldList``.  Only potential temperature
+and salinity are currently available.
+
+Ater the ``woaTransects`` section, there is a section for each supported field
+specifying the information related to the colormap.
+
+For details on remaining configuration options, see:
+ * :ref:`config_transects`
+ * :ref:`config_remapping`
+ * :ref:`config_colormaps`
+ * :ref:`config_seasons`
+
+Observations
+------------
+
+:ref:`woa23_t_s`
+
+Example Result
+--------------
+
+.. image:: examples/woa23_transect.png
+   :width: 500 px
+   :align: center
+
+.. _`World Ocean Atlas 2023 (WOA23)`: https://www.ncei.noaa.gov/products/world-ocean-atlas
diff --git a/mpas_analysis/__main__.py b/mpas_analysis/__main__.py
@@ -228,6 +228,9 @@ def build_analysis_list(config, controlConfig):
     analyses.append(ocean.SoseTransects(config, oceanClimatologyTasks['avg'],
                                         controlConfig))
 
+    analyses.append(ocean.WoaTransects(config, oceanClimatologyTasks['avg'],
+                                       controlConfig))
+
     analyses.append(ocean.GeojsonTransects(config,
                                            oceanClimatologyTasks['avg'],
                                            controlConfig))

diff --git a/mpas_analysis/default.cfg b/mpas_analysis/default.cfg
@@ -203,7 +203,7 @@ tablesSubdirectory = tables
 generate = ['all_publicObs', 'no_icebergs', 'no_climatologyMapAntarcticMelt',
             'no_timeSeriesAntarcticMelt', 'no_timeSeriesOceanRegions',
             'no_climatologyMapSose', 'no_climatologyMapSchmidtko',
-            'no_soseTransects', 'no_oceanRegionalProfiles']
+            'no_soseTransects', 'no_woaTransects', 'no_oceanRegionalProfiles']
 
 
 [climatology]
@@ -3514,6 +3514,141 @@ compareAsContoursOnSinglePlot = True
 contourLevelsResult = [1027.2, 1027.4, 1027.6, 1027.7, 1027.8, 1027.85, 1027.9, 1027.95, 1028.0]
 
 
+[woaTransects]
+## options related to plotting model vs. World Ocean Atlas 2023 (WOA23)
+## transects.
+
+# Times for comparison times (Jan, Feb, Mar, Apr, May, Jun, Jul, Aug, Sep, Oct,
+# Nov, Dec, JFM, AMJ, JAS, OND, ANN)
+seasons =  ['ANN', 'JFM', 'JAS']
+
+# The approximate horizontal resolution (in km) of each transect.  Latitude/
+# longitude between observation points will be subsampled at this interval.
+# Use 'obs' to indicate no subsampling. Use 'mpas' to indicate plotting of
+# model data on the native grid, in which case comparison with observations
+# will take place on the observation grid.
+#horizontalResolution = mpas
+#horizontalResolution = obs
+horizontalResolution = 5
+
+# The name of the vertical comparison grid.  Valid values are 'mpas' for the
+# MPAS vertical grid, 'obs' to use the locations of observations or
+# any other name if the vertical grid is defined by 'verticalComparisonGrid'
+#verticalComparisonGridName = mpas
+#verticalComparisonGridName = obs
+verticalComparisonGridName = uniform_10_to_1500m_at_10m
+
+# The vertical comparison grid if 'verticalComparisonGridName' is not 'mpas' or
+# 'obs'.  This should be numpy array of (typically negative) elevations (in m).
+# The first and last entries are used as axis bounds for 'mpas' and 'obs'
+# vertical comparison grids
+verticalComparisonGrid = numpy.linspace(-10, -1500, 150)
+
+# A range for the y axis (if any)
+verticalBounds = []
+
+# The minimum weight of a destination cell after remapping. Any cell with
+# weights lower than this threshold will therefore be masked out.
+renormalizationThreshold = 0.01
+
+# min and max latitude of transects
+minLat = -80
+maxLat = -60
+
+# longitudes of transects
+# Default transects are at Filchner, Bellingshausen Sea, Thwaites, Ross, Totten,
+# Amery, Fimbul
+longitudes = [318., 280., 253., 187., 117., 75., 0.]
+
+# a list of fields top plot for each transect.  All supported fields are listed
+# below.
+fieldList = ['temperature', 'salinity']
+
+
+[woaTemperatureTransects]
+## options related to plotting WOA23 transects of potential temperature
+
+# colormap for model/observations
+colormapNameResult = RdYlBu_r
+# whether the colormap is indexed or continuous
+colormapTypeResult = continuous
+# the type of norm used in the colormap
+normTypeResult = linear
+# A dictionary with keywords for the norm
+normArgsResult = {'vmin': -2.0, 'vmax': 2.0}
+# color indices into colormapName for filled contours
+#colormapIndicesResult = [0, 40, 80, 110, 140, 170, 200, 230, 255]
+# colormap levels/values for contour boundaries
+#colorbarLevelsResult = [0, 0.25, 0.5, 0.75, 1, 2, 3, 4, 5, 6]
+# place the ticks automatically by default
+# colorbarTicksResult = numpy.linspace(0.0, 6.0, 9)
+# contour line levels (use [] for automatic contour selection, 'none' for no
+# contour lines)
+#contourLevelsResult = np.arange(0.5, 6.0, 1.0)
+contourLevelsResult = 'none'
+
+# colormap for differences
+colormapNameDifference = balance
+# whether the colormap is indexed or continuous
+colormapTypeDifference = continuous
+# the type of norm used in the colormap
+normTypeDifference = linear
+# A dictionary with keywords for the norm
+normArgsDifference = {'vmin': -2.0, 'vmax': 2.0}
+# color indices into colormapName for filled contours
+#colormapIndicesDifference = [0, 28, 57, 85, 113, 128, 128, 142, 170, 198, 227, 255]
+# colormap levels/values for contour boundaries
+#colorbarLevelsDifference = [-2, -1.5, -1.25, -1, -0.2, 0, 0.2, 1, 1.25, 1.5, 2]
+# place the ticks automatically by default
+# colorbarTicksDifference = numpy.linspace(-2.0, 2.0, 9)
+# contour line levels (use [] for automatic contour selection, 'none' for no
+# contour lines)
+#contourLevelsDifference = np.arange(-1.8, 2.0, 0.4)
+contourLevelsDifference = 'none'
+
+
+[woaSalinityTransects]
+## options related to plotting WOA23 transects of salinity
+
+# colormap for model/observations
+colormapNameResult = haline
+# whether the colormap is indexed or continuous
+colormapTypeResult = continuous
+# the type of norm used in the colormap
+normTypeResult = linear
+# A dictionary with keywords for the norm
+normArgsResult = {'vmin': 33.8, 'vmax': 35.0}
+# color indices into colormapName for filled contours
+#colormapIndicesResult = [0, 40, 80, 110, 140, 170, 200, 230, 255]
+# colormap levels/values for contour boundaries
+#colorbarLevelsResult = [34, 34.3, 34.5, 34.65, 34.675, 34.7, 34.725, 34.75, 34.8, 35]
+# place the ticks automatically by default
+# colorbarTicksResult = numpy.linspace(34.0, 35.0, 9)
+# contour line levels (use [] for automatic contour selection, 'none' for no
+# contour lines)
+#contourLevelsResult = np.arange(34.1, 35.0, 0.1)
+contourLevelsResult = 'none'
+
+# colormap for differences
+colormapNameDifference = balance
+# whether the colormap is indexed or continuous
+colormapTypeDifference = continuous
+# the type of norm used in the colormap
+normTypeDifference = linear
+# A dictionary with keywords for the norm
+normArgsDifference = {'vmin': -0.5, 'vmax': 0.5}
+# color indices into colormapName for filled contours
+#colormapIndicesDifference = [0, 28, 57, 85, 113, 128, 128, 142, 170, 198, 227, 255]
+# colormap levels/values for contour boundaries
+#colorbarLevelsDifference = [-0.5, -0.2, -0.1, -0.05, -0.02, 0,  0.02, 0.05, 0.1, 0.2, 0.5]
+# place the ticks automatically by default
+# colorbarTicksDifference = numpy.linspace(-0.5, 0.5, 9)
+# contour line levels (use [] for automatic contour selection, 'none' for no
+# contour lines)
+#contourLevelsDifference = numpy.linspace(-0.6, 0.6, 9)
+contourLevelsDifference = 'none'
+
+
 [climatologyMapBGC]
 ## options related to plotting climatology mpas of BGC