duckdb demo build #45
Workflow file for this run
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name: duckdb demo build | |
on: | |
pull_request_review: | |
types: [submitted] | |
jobs: | |
mimic-iv-duckdb: | |
# only run if PR is approved | |
if: github.event.review.state == 'approved' | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Check out repository code | |
uses: actions/checkout@v3 | |
- name: Download duckdb CLI | |
run: | | |
wget https://github.com/duckdb/duckdb/releases/download/v0.6.1/duckdb_cli-linux-amd64.zip | |
unzip duckdb_cli-linux-amd64.zip | |
echo "$HOME/.local/bin" >> $GITHUB_PATH | |
mkdir -p "$HOME/.local/bin" | |
mv duckdb "$HOME/.local/bin/duckdb" | |
- name: Download demo data | |
uses: ./.github/actions/download-demo | |
- name: Load icu/hosp data into duckdb | |
run: | | |
echo "Running duckdb build." | |
cd ${BUILDCODE_PATH} | |
./import_duckdb.sh ./ | |
echo `md5sum mimic4.db` | |
env: | |
BUILDCODE_PATH: mimic-iv/buildmimic/duckdb |