sqlite demo db build #60
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name: sqlite demo db build | |
on: | |
pull_request_review: | |
types: [submitted] | |
jobs: | |
mimic-iv-sqlite: | |
# only run if PR is approved | |
if: github.event.review.state == 'approved' | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Check out repository code | |
uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Python dependencies | |
run: | | |
pip install pandas | |
- name: Download demo data | |
uses: ./.github/actions/download-demo | |
- name: Load icu/hosp data into SQLite | |
run: | | |
echo "Running SQLite build." | |
python ${BUILDCODE_PATH}/import.py | |
echo `md5sum mimic4.db` | |
env: | |
BUILDCODE_PATH: mimic-iv/buildmimic/sqlite |