Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

'MDAnalysis.analysis.nucleicacids' parallelization #4727

Open
wants to merge 16 commits into
base: develop
Choose a base branch
from
Open

'MDAnalysis.analysis.nucleicacids' parallelization #4727

wants to merge 16 commits into from

Commits on Oct 7, 2024

  1. Update nucleicacids.py 

    added backend and aggregators
    @talagayev
    talagayev authored Oct 7, 2024
    Configuration menu
    Copy the full SHA
    b00d502 View commit details
    Browse the repository at this point in the history

  2. Update conftest.py 

    added NucPairDist to the conftest.py
    @talagayev
    talagayev authored Oct 7, 2024
    Configuration menu
    Copy the full SHA
    dc03a02 View commit details
    Browse the repository at this point in the history

  3. Update test_nucleicacids.py 

    added client_NucPairDist to the tests
    @talagayev
    talagayev authored Oct 7, 2024
    Configuration menu
    Copy the full SHA
    39612c8 View commit details
    Browse the repository at this point in the history

Commits on Oct 10, 2024

  1. fix nucl parallel

    @yuxuanzhuang
    yuxuanzhuang committed Oct 10, 2024
    Configuration menu
    Copy the full SHA
    8feb071 View commit details
    Browse the repository at this point in the history

Commits on Oct 14, 2024

  1. Update nucleicacids.py 

    fixing PEP
    @talagayev
    talagayev authored Oct 14, 2024
    Configuration menu
    Copy the full SHA
    b2d81b0 View commit details
    Browse the repository at this point in the history

  2. Update nucleicacids.py

    @talagayev
    talagayev authored Oct 14, 2024
    Configuration menu
    Copy the full SHA
    e30716b View commit details
    Browse the repository at this point in the history

  3. Update nucleicacids.py 

    added versionchanged for addition of parallelization
    @talagayev
    talagayev authored Oct 14, 2024
    Configuration menu
    Copy the full SHA
    883eb1e View commit details
    Browse the repository at this point in the history

  4. Update nucleicacids.py

    @talagayev
    talagayev authored Oct 14, 2024
    Configuration menu
    Copy the full SHA
    701ed01 View commit details
    Browse the repository at this point in the history

  5. Update conftest.py

    @talagayev
    talagayev authored Oct 14, 2024
    Configuration menu
    Copy the full SHA
    82a89f9 View commit details
    Browse the repository at this point in the history

  6. Update CHANGELOG 

    Added Parallelization of nucleicacids.py and fixed lettering
    @talagayev
    talagayev authored Oct 14, 2024
    Configuration menu
    Copy the full SHA
    886832e View commit details
    Browse the repository at this point in the history

  7. Update nucleicacids.py 

    Addition of mention of modification to self.results.distances
    @talagayev
    talagayev authored Oct 14, 2024
    Configuration menu
    Copy the full SHA
    c722ac4 View commit details
    Browse the repository at this point in the history

Commits on Oct 18, 2024

  1. Update nucleicacids.py 

    removed _res_dict
    @talagayev
    talagayev authored Oct 18, 2024
    Configuration menu
    Copy the full SHA
    d08347f View commit details
    Browse the repository at this point in the history

  2. Update nucleicacids.py 

    moved back _res_dict
    @talagayev
    talagayev authored Oct 18, 2024
    Configuration menu
    Copy the full SHA
    f471ad6 View commit details
    Browse the repository at this point in the history

  3. Update nucleicacids.py 

    removed _res_sel
    @talagayev
    talagayev authored Oct 18, 2024
    Configuration menu
    Copy the full SHA
    140366c View commit details
    Browse the repository at this point in the history

Commits on Oct 19, 2024

  1. Update nucleicacids.py 

    remove unecessary ,
    @talagayev
    talagayev authored Oct 19, 2024
    Configuration menu
    Copy the full SHA
    5a119db View commit details
    Browse the repository at this point in the history

Commits on Oct 23, 2024

  1. Update package/MDAnalysis/analysis/nucleicacids.py

    @orbeckst
    orbeckst authored Oct 23, 2024
    Configuration menu
    Copy the full SHA
    c68cb84 View commit details
    Browse the repository at this point in the history