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Script for downloading example data #3

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lcolladotor opened this issue Jul 6, 2020 · 4 comments
Closed

Script for downloading example data #3

lcolladotor opened this issue Jul 6, 2020 · 4 comments
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@Nick-Eagles

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@lcolladotor
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Write a script that can download the example data. The example DNA genotype data might live in this repo if it's tiny (depends on #2). The FASTQ data should ideally already be publicly available given that in #1 we'll choose data from LIBD public projects. But if it gets complicated, we might need to host the data on AWS (talk to Andrew about this).

The goal is to have a full length example available for SPEAQeasy users.
@lcolladotor lcolladotor mentioned this issue Jul 6, 2020
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@lcolladotor
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Should also include the input phenotype info (prior to resolving the swaps) which will be used as an input in #5

@joshstolz
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Script was made for subsetting genotype samples.

@joshstolz joshstolz reopened this Jul 27, 2020
@lcolladotor
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@joshstolz can you verify whether it's ok to close this issue?

@lcolladotor
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@joshstolz @Nick-Eagles can you check this?

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@lcolladotor @Nick-Eagles @joshstolz