DESCRIPTION

Package: DeconvoBuddies
Title: Helper Functions for LIBD Deconvolution
Version: 0.99.8
Date: 2024-10-25
Authors@R: 
    c(
    person(given = "Louise", family = "Huuki-Myers", role = c("aut", "cre"),
    email = "lahuuki@gmail.com", comment = c(ORCID = "0000-0001-5148-3602")),
    person("Leonardo", "Collado-Torres", role = c("ctb"), 
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X"))
    )
Description: Funtions helpful for LIBD deconvolution project. Includes tools for marker finding with mean ratio, expression plotting, and plotting deconvolution results. Working to include DLPFC datasets.
License: Artistic-2.0
URL: https://github.com/lahuuki/DeconvoBuddies
BugReports: https://support.bioconductor.org/tag/DeconvoBuddies
biocViews: Software, SingleCell, RNASeq, GeneExpression, Transcriptomics
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports:
    AnnotationHub,
    BiocFileCache,
    dplyr,
    ExperimentHub,
    ggplot2,
    graphics,
    grDevices,
    matrixStats,
    methods,
    purrr,
    rafalib,
    RColorBrewer,
    reshape2,
    S4Vectors,
    scran,
    SingleCellExperiment,
    spatialLIBD,
    stats,
    stringr,
    SummarizedExperiment,
    tibble,
    utils
Suggests: 
    Biobase,
    BiocStyle,
    BisqueRNA,
    covr,
    HDF5Array,
    knitr,
    RefManageR,
    rmarkdown,
    sessioninfo,
    testthat (>= 3.0.0),
    tidyr,
    tidyverse
Config/testthat/edition: 3
Depends: 
    R (>= 4.4.0)
VignetteBuilder: knitr