fix(interactive): support a general Intersect implementation in GIE…
#8
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| name: GraphScope CI on Local | |
| on: | |
| # Trigger the workflow on push or pull request, | |
| # but only for the main branch | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - 'CONTRIBUTORS' | |
| - 'LICENSE' | |
| - 'NOTICE.txt' | |
| - '**.md' | |
| - '**.rst' | |
| - 'docs/**' | |
| - 'demo/**' | |
| - 'scripts/**' | |
| - 'tutorials/**' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - '.github/workflows/local-ci.yml' | |
| - 'Makefile' | |
| - 'analytical_engine/**' | |
| - 'charts/**' | |
| - 'coordinator/**' | |
| - 'interactive_engine/**' | |
| - 'k8s/**' | |
| - 'learning_engine/**' | |
| - 'proto/**' | |
| - 'python/**' | |
| - '!**.md' | |
| - '!**.rst' | |
| concurrency: | |
| group: ${{ github.repository }}-${{ github.event.number || github.head_ref || github.sha }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| env: | |
| GS_IMAGE: registry.cn-hongkong.aliyuncs.com/graphscope/graphscope | |
| jobs: | |
| # JOB to run change detection | |
| changes: | |
| runs-on: ubuntu-20.04 | |
| # Set job outputs to values from filter step | |
| outputs: | |
| gae-python: ${{ steps.filter.outputs.gae-python }} | |
| networkx: ${{ steps.filter.outputs.networkx }} | |
| gie-function-test: ${{ steps.filter.outputs.gie-function-test }} | |
| steps: | |
| # For push it's necessary to checkout the code | |
| - uses: actions/checkout@v3 | |
| - name: Detect the tmate session | |
| run: | | |
| # hack here: get all field of build-wheels which run on self-hosted machine | |
| if sed -n '/self-hosted/,/mini-test/ p' .github/workflows/local-ci.yml | \ | |
| grep -v "grep" - | grep "action-tmate"; then | |
| echo 'WARNING!!!the self-hosted machine cannot run tmate session, please debug it manually' | |
| exit 1 | |
| fi | |
| # For pull requests it's not necessary to checkout the code | |
| - uses: dorny/paths-filter@v2 | |
| id: filter | |
| with: | |
| base: main # Change detection against merge-base with main before push | |
| filters: | | |
| gae-python: | |
| - 'proto/**' | |
| - 'analytical_engine/**' | |
| - 'python/graphscope/analytical/**' | |
| - 'python/graphscope/client/**' | |
| - 'python/graphscope/dataset/**' | |
| - 'python/graphscope/deploy/**' | |
| - 'python/graphscope/framework/**' | |
| - 'python/graphscope/tests/unittest/**' | |
| - 'coordinator/gscoordinator/**' | |
| - '.github/workflows/ci.yml' | |
| networkx: | |
| - 'analytical_engine/apps/**' | |
| - 'analytical_engine/frame/**' | |
| - 'analytical_engine/core/**' | |
| - 'python/graphscope/nx/**' | |
| - 'python/requirements.txt' | |
| gie-function-test: | |
| - 'interactive_engine/**' | |
| - 'python/graphscope/interactive/**' | |
| - '.github/workflows/ci.yml' | |
| gie-k8s-failover-test: | |
| - 'interactive_engine/**' | |
| - 'charts/ir-standalone/**' | |
| - name: Cpp Format and Lint Check | |
| run: | | |
| # install clang-format | |
| sudo curl -L https://github.com/muttleyxd/clang-tools-static-binaries/releases/download/master-22538c65/clang-format-8_linux-amd64 --output /usr/bin/clang-format | |
| sudo chmod +x /usr/bin/clang-format | |
| # collect the source files | |
| cd analytical_engine/ | |
| files=$(find ./apps ./benchmarks ./core ./frame ./misc ./test \( -name "*.h" -o -name "*.cc" \)) | |
| # run format | |
| clang-format -i --style=file $(echo $files) | |
| # validate format | |
| function prepend() { while read line; do echo "${1}${line}"; done; } | |
| GIT_DIFF=$(git diff --ignore-submodules) | |
| if [[ -n $GIT_DIFF ]]; then | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| echo "| clang-format failures found!" | |
| echo "|" | |
| echo "$GIT_DIFF" | prepend "| " | |
| echo "|" | |
| echo "| Run: " | |
| echo "|" | |
| echo "| make gsa_clformat" | |
| echo "|" | |
| echo "| to fix this error." | |
| echo "|" | |
| echo "| Ensure you are working with clang-format-8, which can be obtained from" | |
| echo "|" | |
| echo "| https://github.com/muttleyxd/clang-tools-static-binaries/releases" | |
| echo "|" | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| exit -1 | |
| fi | |
| # validate cpplint | |
| function ec() { [[ "$1" == "-h" ]] && { shift && eval $* > /dev/null 2>&1; ec=$?; echo $ec; } || eval $*; ec=$?; } | |
| # run cpplint | |
| ec ./misc/cpplint.py $(echo $files) | |
| if [[ "$ec" != "0" ]]; then | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| echo "| cpplint failures found! Run: " | |
| echo "|" | |
| echo "| make gsa_cpplint" | |
| echo "|" | |
| echo "| to fix this error." | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| exit -1 | |
| fi | |
| - name: Python Format and Lint Check | |
| run: | | |
| echo "Checking formatting for $GITHUB_REPOSITORY" | |
| pip3 install -r coordinator/requirements-dev.txt | |
| pushd python | |
| python3 -m isort --check --diff . | |
| python3 -m black --check --diff . | |
| python3 -m flake8 . | |
| popd | |
| pushd coordinator | |
| python3 -m isort --check --diff . | |
| python3 -m black --check --diff . | |
| python3 -m flake8 . | |
| - name: Setup Java11 | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: '11' | |
| - name: Java Format and Lint Check | |
| run: | | |
| wget https://github.com/google/google-java-format/releases/download/v1.13.0/google-java-format-1.13.0-all-deps.jar | |
| files_to_format=$(git ls-files *.java) | |
| # run formatter in-place | |
| java -jar ${GITHUB_WORKSPACE}/google-java-format-1.13.0-all-deps.jar --aosp --skip-javadoc-formatting -i $files_to_format | |
| # validate format | |
| function prepend() { while read line; do echo "${1}${line}"; done; } | |
| GIT_DIFF=$(git diff --ignore-submodules) | |
| if [[ -n $GIT_DIFF ]]; then | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| echo "| google-java-format failures found!" | |
| echo "|" | |
| echo "$GIT_DIFF" | prepend "| " | |
| echo "|" | |
| echo "| Run: " | |
| echo "|" | |
| echo '| java -jar google-java-format-1.13.0-all-deps.jar --aosp --skip-javadoc-formatting -i $(git ls-files **/*.java)' | |
| echo "|" | |
| echo "| to fix this error." | |
| echo "|" | |
| echo "| Ensure you are working with google-java-format-1.13.0, which can be obtained from" | |
| echo "|" | |
| echo "| https://github.com/google/google-java-format/releases/download/v1.13.0/google-java-format-1.13.0-all-deps.jar" | |
| echo "|" | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| exit -1 | |
| fi | |
| build-wheels: | |
| # Require the user id of the self-hosted is 1001, which may need to be | |
| # configured manually when a new self-hosted runner is added. | |
| runs-on: [self-hosted, ubuntu2004] | |
| needs: [changes] | |
| if: ${{ github.repository == 'alibaba/GraphScope' }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.m2/repository | |
| key: ${{ runner.os }}-maven-${{ hashFiles('**/pom.xml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-maven- | |
| - uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~/.cargo/bin/ | |
| ~/.cargo/registry/index/ | |
| ~/.cargo/registry/cache/ | |
| ~/.cargo/git/db/ | |
| ~/.cache/sccache | |
| key: ${{ runner.os }}-cargo-${{ hashFiles('**/Cargo.lock') }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Build Wheels | |
| run: | | |
| #sleep infinity | |
| git submodule update --init | |
| cd ${GITHUB_WORKSPACE}/learning_engine/graph-learn && git submodule update --init third_party/pybind11 | |
| # build graphscope wheels | |
| cd ${GITHUB_WORKSPACE}/k8s/internal | |
| # sudo -E -u runner make graphscope-py3-package GRAPHSCOPE_HOME=/opt/graphscope | |
| make graphscope-py3-package GRAPHSCOPE_HOME=/opt/graphscope INSTALL_PREFIX=/home/graphscope/graphscope-install REGISTRY=registry-vpc.cn-hongkong.aliyuncs.com | |
| # build client wheels | |
| # sudo -E -u runner make graphscope-client-py3-package GRAPHSCOPE_HOME=/opt/graphscope | |
| make graphscope-client-py3-package GRAPHSCOPE_HOME=/opt/graphscope INSTALL_PREFIX=/home/graphscope/graphscope-install REGISTRY=registry-vpc.cn-hongkong.aliyuncs.com | |
| # package | |
| cd ${GITHUB_WORKSPACE} | |
| sudo chown $(id -u) -R . | |
| tar -zcf client.tar.gz python/dist/wheelhouse/*.whl | |
| tar -zcf graphscope.tar.gz coordinator/dist/ | |
| - name: Upload Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheel-${{ github.sha }} | |
| path: | | |
| client.tar.gz | |
| graphscope.tar.gz | |
| retention-days: 5 | |
| mini-test: | |
| runs-on: ubuntu-20.04 | |
| if: ${{ github.repository == 'alibaba/GraphScope' }} | |
| needs: [build-wheels] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| path: artifacts | |
| - name: Prepare Environment | |
| env: | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| # install graphscope-client | |
| cd artifacts | |
| tar -zxf ./wheel-${{ github.sha }}/client.tar.gz | |
| pushd python/dist/wheelhouse | |
| for f in * ; do python3 -m pip install --no-cache-dir $f || true; done | |
| popd | |
| # install graphscope | |
| tar -zxf ./wheel-${{ github.sha }}/graphscope.tar.gz | |
| pushd coordinator/dist | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| pushd coordinator/dist/wheelhouse | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| # install tensorflow | |
| python3 -m pip install --no-cache-dir pytest pytest-xdist "tensorflow" "pandas" --user | |
| # install pytorch | |
| python3 -m pip install --no-cache-dir "torch<=2.2.1" "networkx<=3.0" --index-url https://download.pytorch.org/whl/cpu | |
| # install java | |
| sudo apt update -y && sudo apt install openjdk-11-jdk -y | |
| # download dataset | |
| git clone -b master --single-branch --depth=1 https://github.com/7br/gstest.git ${GS_TEST_DIR} | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: false | |
| - name: Run Minimum Test | |
| env: | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| python3 -m pytest -d --tx popen//python=python3 \ | |
| -s -v \ | |
| $(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/tests/minitest | |
| - name: Upload GIE log | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| continue-on-error: true | |
| with: | |
| name: gie-log | |
| path: ~/.local/log/graphscope | |
| python-unittest: | |
| runs-on: ubuntu-20.04 | |
| needs: [build-wheels, changes] | |
| if: ${{ github.repository == 'alibaba/GraphScope' }} | |
| defaults: | |
| run: | |
| shell: bash --noprofile --norc -eo pipefail {0} | |
| strategy: | |
| matrix: | |
| deployment: ["standalone", "distributed"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| if: ${{ needs.changes.outputs.gae-python == 'true' }} | |
| - uses: actions/download-artifact@v3 | |
| if: ${{ needs.changes.outputs.gae-python == 'true' }} | |
| with: | |
| path: artifacts | |
| - name: Prepare Environment | |
| if: ${{ needs.changes.outputs.gae-python == 'true' }} | |
| run: | | |
| # install graphscope-client | |
| cd artifacts | |
| tar -zxf ./wheel-${{ github.sha }}/client.tar.gz | |
| pushd python/dist/wheelhouse | |
| for f in * ; do python3 -m pip install --no-cache-dir $f || true; done | |
| popd | |
| # install graphscope | |
| tar -zxf ./wheel-${{ github.sha }}/graphscope.tar.gz | |
| pushd coordinator/dist | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| pushd coordinator/dist/wheelhouse | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| # install pytest | |
| python3 -m pip install --no-cache-dir pytest pytest-cov pytest-timeout pytest-xdist | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: false | |
| - name: Run Python Test | |
| if: ${{ needs.changes.outputs.gae-python == 'true' }} | |
| env: | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| DEPLOYMENT: ${{ matrix.deployment }} | |
| run: | | |
| # download dataset | |
| git clone -b master --single-branch --depth=1 https://github.com/7br/gstest.git ${GS_TEST_DIR} | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| python3 -m pytest -d --tx popen//python=python3 \ | |
| -s -v \ | |
| --cov=graphscope --cov-config=python/.coveragerc --cov-report=xml --cov-report=term \ | |
| --exitfirst \ | |
| $(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/tests/unittest | |
| - name: Upload Coverage | |
| if: ${{ needs.changes.outputs.gae-python == 'true' || github.ref == 'refs/heads/main' }} | |
| uses: codecov/codecov-action@v3 | |
| continue-on-error: true | |
| with: | |
| file: ./coverage.xml | |
| fail_ci_if_error: false | |
| networkx-basic-test: | |
| runs-on: ubuntu-20.04 | |
| needs: [build-wheels, changes] | |
| if: ${{ github.repository == 'alibaba/GraphScope' }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| deployment: ["standalone", "distributed"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| - uses: dorny/paths-filter@v2 | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| id: nx-filter | |
| with: | |
| filters: | | |
| basic: | |
| - 'analytical_engine/apps/**' | |
| - 'analytical_engine/frame/**' | |
| - 'analytical_engine/core/**' | |
| - 'python/graphscope/nx/__init__.py' | |
| - 'python/graphscope/nx/classes/**' | |
| - 'python/graphscope/nx/!(tests)' | |
| - 'python/graphscope/nx/tests/!(convert)' | |
| - 'python/requirements.txt' | |
| convert: | |
| - 'python/graphscope/nx/convert.py' | |
| - 'python/graphscope/nx/convert_matrix.py' | |
| - 'python/graphscope/nx/tests/convert/**' | |
| - uses: actions/download-artifact@v3 | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| with: | |
| path: artifacts | |
| - name: Prepare Environment | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| env: | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| # install graphscope-client | |
| cd artifacts | |
| tar -zxf ./wheel-${{ github.sha }}/client.tar.gz | |
| pushd python/dist/wheelhouse | |
| for f in * ; do python3 -m pip install --no-cache-dir $f || true; done | |
| popd | |
| # install graphscope | |
| tar -zxf ./wheel-${{ github.sha }}/graphscope.tar.gz | |
| pushd coordinator/dist | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| pushd coordinator/dist/wheelhouse | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| # install pytest | |
| python3 -m pip install --no-cache-dir pytest pytest-xdist | |
| # download dataset | |
| git clone -b master --single-branch --depth=1 https://github.com/7br/gstest.git ${GS_TEST_DIR} | |
| - name: Setup tmate session | |
| uses: mxschmitt/action-tmate@v3 | |
| if: false | |
| - name: Basic Test | |
| if: ${{ needs.changes.outputs.networkx == 'true' && steps.nx-filter.outputs.basic == 'true' }} | |
| env: | |
| DEPLOYMENT: ${{ matrix.deployment }} | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| pip3 show networkx | |
| python3 -m pytest -d --tx popen//python=python3 \ | |
| --exitfirst -s -vvv \ | |
| $(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/nx/tests \ | |
| --ignore=$(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/nx/tests/convert | |
| - name: Convert Test | |
| if: ${{ needs.changes.outputs.networkx == 'true' && steps.nx-filter.outputs.convert == 'true' }} | |
| env: | |
| DEPLOYMENT: ${{ matrix.deployment }} | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| pip3 show networkx | |
| python3 -m pytest -d --tx popen//python=python3 \ | |
| --exitfirst -s -vvv \ | |
| $(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/nx/tests/convert | |
| networkx-algo-and-generator-test: | |
| runs-on: ubuntu-20.04 | |
| needs: [build-wheels, changes] | |
| if: ${{ github.repository == 'alibaba/GraphScope' }} | |
| strategy: | |
| matrix: | |
| deployment: ["standalone", "distributed"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| - uses: dorny/paths-filter@v2 | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| id: nx-filter | |
| with: | |
| filters: | | |
| algorithm: | |
| - 'analytical_engine/apps/**' | |
| - 'analytical_engine/frame/**' | |
| - 'python/graphscope/nx/algorithms/builtin.py' | |
| - 'python/graphscope/nx/algorithms/tests/builtin/**' | |
| generator: | |
| - 'python/graphscope/nx/classes/**' | |
| - 'python/graphscope/nx/utils/**' | |
| - 'python/graphscope/nx/generators/**' | |
| io: | |
| - 'python/graphscope/nx/readwrite/**' | |
| - uses: actions/download-artifact@v3 | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| with: | |
| path: artifacts | |
| - name: Prepare Environment | |
| if: ${{ needs.changes.outputs.networkx == 'true' }} | |
| env: | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| # install graphscope-client | |
| cd artifacts | |
| tar -zxf ./wheel-${{ github.sha }}/client.tar.gz | |
| pushd python/dist/wheelhouse | |
| for f in * ; do python3 -m pip install --no-cache-dir $f || true; done | |
| popd | |
| # install graphscope | |
| tar -zxf ./wheel-${{ github.sha }}/graphscope.tar.gz | |
| pushd coordinator/dist | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| pushd coordinator/dist/wheelhouse | |
| python3 -m pip install --no-cache-dir ./*.whl | |
| popd | |
| # install pytest | |
| python3 -m pip install --no-cache-dir pytest pytest-xdist | |
| # download dataset | |
| git clone -b master --single-branch --depth=1 https://github.com/7br/gstest.git ${GS_TEST_DIR} | |
| - name: Algorithm test | |
| if: ${{ needs.changes.outputs.networkx == 'true' && steps.nx-filter.outputs.algorithm == 'true' }} | |
| env: | |
| DEPLOYMENT: ${{ matrix.deployment }} | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| pip3 show networkx | |
| python3 -m pytest -d --tx popen//python=python3 \ | |
| --exitfirst -s -v \ | |
| $(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/nx/algorithms/tests/builtin | |
| - name: Generator test | |
| if: ${{ needs.changes.outputs.networkx == 'true' && steps.nx-filter.outputs.generator == 'true' }} | |
| env: | |
| DEPLOYMENT: ${{ matrix.deployment }} | |
| GS_TEST_DIR: ${{ github.workspace }}/gstest | |
| run: | | |
| pip3 show networkx | |
| python3 -m pytest -d --tx popen//python=python3 \ | |
| --exitfirst -s -v \ | |
| $(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/nx/generators/tests | |
| - name: Readwrite test | |
| if: ${{ needs.changes.outputs.networkx == 'true' && steps.nx-filter.outputs.io == 'true' }} | |
| env: | |
| DEPLOYMENT: ${{ matrix.deployment }} | |
| run: | | |
| python3 -m pytest -d --tx popen//python=python3 \ | |
| --exitfirst -s -v -m "not slow" \ | |
| $(dirname $(python3 -c "import graphscope; print(graphscope.__file__)"))/nx/readwrite/tests |