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Histology request form #828

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Histology request form #828

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951a407
IPC project files, Round 1
kollil Oct 25, 2023
db5a391
IPC project files, Round 2
kollil Oct 26, 2023
f6468e9
Changed the folder
kollil Oct 31, 2023
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2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_CassetteColors.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCCassetteColor' and dateDisabled is null
87 changes: 87 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_CassettePrinting.query.xml
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<!--IPC schema. Added by Kolli, 04/2020 -->
<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="IPC_CassettePrinting" tableDbType="TABLE" useColumnOrder="true">
<tableUrl />
<tableTitle>IPC Cassette Printing</tableTitle>
<columns>
<column columnName="rowId">
<isHidden>true</isHidden>
</column>

<column columnName="Id">
<columnTitle>Id</columnTitle>
</column>

<column columnName="Date">
<columnTitle>Date</columnTitle>
</column>

<column columnName="tissueType">
<columnTitle>Tissue Types</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_TissueTypes</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="PILabel">
<columnTitle>PI Label Text</columnTitle>
</column>

<column columnName="cassetteColor">
<columnTitle>Cassette Color</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_CassetteColors</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="remark">
<columnTitle>Remarks</columnTitle>
</column>

<column columnName="qcstate">
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>qcstate</fkTable>
<fkColumnName>RowId</fkColumnName>
</fk>
</column>

<column columnName="taskid">
<columnTitle>Task Id</columnTitle>
<fk>
<fkDbSchema>ehr</fkDbSchema>
<fkTable>tasks</fkTable>
<fkColumnName>taskid</fkColumnName>
</fk>
</column>
<column columnName="objectid">
<isHidden>true</isHidden>
</column>
<column columnName="performedBy">
<columnTitle>Performed By</columnTitle>
</column>
<column columnName="created">
<isHidden>true</isHidden>
</column>
<column columnName="createdby"/>

<column columnName="modified">
<isHidden>true</isHidden>
</column>
<column columnName="modifiedby"/>

<column columnName="container">
<isHidden>true</isHidden>
</column>

</columns>
</table>
</tables>
</metadata>
</query>
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_CurrentFixative.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCCurrentFixative' and dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Embedding.sql
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-- Get Embedding values
SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCEmbedding' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_FixationMethod.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCFixationMethod' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_FrozenSectionThickness.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCFrozenSectionThickness' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_FrozenSectioning.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCFrozenSectioning' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_HandE.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCHAndE' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_IHC.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCIHC' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_IHCAntibody.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCIHCAntibody' and dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Investigators.sql
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SELECT lastName + ', ' + firstName as name
From Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.investigators
Where dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Locations.sql
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SELECT room
From Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.ehr_lookups.rooms
Where dateDisabled is null order by room
80 changes: 80 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Other.query.xml
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<!--IPC schema. Added by Kolli, 04/2020 -->
<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="IPC_Other" tableDbType="TABLE" useColumnOrder="true">
<tableUrl />
<tableTitle>IPC Other</tableTitle>
<columns>
<column columnName="rowId">
<isHidden>true</isHidden>
</column>

<column columnName="Id">
<columnTitle>Id</columnTitle>
</column>

<column columnName="Date">
<columnTitle>Date</columnTitle>
</column>

<column columnName="tissueType">
<columnTitle>Tissue Types</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_TissueTypes</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="serviceAndProducts">
<columnTitle>Services And Products</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_OtherServices</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="performedBy">
<columnTitle>Performed By</columnTitle>
</column>

<column columnName="qcstate">
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>qcstate</fkTable>
<fkColumnName>RowId</fkColumnName>
</fk>
</column>

<column columnName="taskid">
<columnTitle>Task Id</columnTitle>
<fk>
<fkDbSchema>ehr</fkDbSchema>
<fkTable>tasks</fkTable>
<fkColumnName>taskid</fkColumnName>
</fk>
</column>
<column columnName="objectid">
<isHidden>true</isHidden>
</column>
<column columnName="created">
<isHidden>true</isHidden>
</column>
<column columnName="createdby"/>

<column columnName="modified">
<isHidden>true</isHidden>
</column>
<column columnName="modifiedby"/>

<column columnName="container">
<isHidden>true</isHidden>
</column>

</columns>
</table>
</tables>
</metadata>
</query>
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_OtherServices.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCOtherServices' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_ParaffinSectioning.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCParaffinSectioning' and dateDisabled is null
3 changes: 3 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_Pathologist.sql
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SELECT displayname as name
From Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.Reference_StaffNames
Where Type like 'Necropsy' and DisableDate is null
115 changes: 115 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_ProcessingEmbedding.query.xml
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<!--IPC schema. Added by Kolli, 04/2020 -->
<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="IPC_ProcessingEmbedding" tableDbType="TABLE" useColumnOrder="true">
<tableUrl />
<tableTitle>IPC Processing Embedding</tableTitle>
<columns>
<column columnName="rowId">
<isHidden>true</isHidden>
</column>

<column columnName="Id">
<columnTitle>Id</columnTitle>
</column>

<column columnName="Date">
<columnTitle>Date</columnTitle>
</column>

<column columnName="tissueType">
<columnTitle>Tissue Types</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_TissueTypes</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="embedding">
<columnTitle>Embedding</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_Embedding</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="fixationMethod">
<columnTitle>Initial Fixative</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_FixationMethod</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="fixationDuration">
<columnTitle>Fixation Duration</columnTitle>
</column>

<column columnName="currentFixative">
<columnTitle>Current Fixative</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_CurrentFixative</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="processingType">
<columnTitle>Processing Type</columnTitle>
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>IPC_ProcessingType</fkTable>
<fkColumnName>value</fkColumnName>
</fk>
</column>

<column columnName="embeddingIns">
<columnTitle>Embedding Instructions</columnTitle>
</column>

<column columnName="performedBy">
<columnTitle>Performed By</columnTitle>
</column>

<column columnName="qcstate">
<fk>
<fkDbSchema>study</fkDbSchema>
<fkTable>qcstate</fkTable>
<fkColumnName>RowId</fkColumnName>
</fk>
</column>

<column columnName="taskid">
<columnTitle>Task Id</columnTitle>
<fk>
<fkDbSchema>ehr</fkDbSchema>
<fkTable>tasks</fkTable>
<fkColumnName>taskid</fkColumnName>
</fk>
</column>
<column columnName="objectid">
<isHidden>true</isHidden>
</column>
<column columnName="created">
<isHidden>true</isHidden>
</column>
<column columnName="createdby"/>

<column columnName="modified">
<isHidden>true</isHidden>
</column>
<column columnName="modifiedby"/>

<column columnName="container">
<isHidden>true</isHidden>
</column>

</columns>
</table>
</tables>
</metadata>
</query>
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_ProcessingType.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCProcessingType' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_RNAScope.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCRNAScope' and dateDisabled is null
2 changes: 2 additions & 0 deletions onprc_ehr/resources/queries/study/IPC_SectionThickness.sql
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SELECT value, name from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.onprc_ehr.IPC_Reference_Data
Where name like 'IPCSectionThickness' and dateDisabled is null
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