unit test for setup_pipeline complete #33
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# Author - Stuart McAlpine - [email protected] - Jan 2023 | |
name: DESC Legacy Blinding for Cosmosis | |
# How does the workflow get triggered? | |
on: | |
# Triggers when push/pull-request made to the main branch. | |
pull_request: | |
branches: | |
- main | |
push: | |
branches: | |
- main | |
- develop | |
# List of jobs for this workflow. | |
jobs: | |
# Our pytest job. | |
legacy_blinding-pytest: | |
# Our strategy lists the OS and Python versions we want to test on. | |
strategy: | |
# Don't quit all jobs if only one job fails. | |
fail-fast: false | |
matrix: | |
python-version: ["3.9"] | |
os: [ubuntu-20.04, macos-latest] | |
include: | |
- os: ubuntu-20.04 | |
INSTALL_DEPS: sudo apt-get update && sudo apt-get -y install gfortran-7 swig libopenmpi-dev openmpi-bin libopenblas-dev && sudo ln -s `which gfortran-7` /usr/local/bin/gfortran | |
- os: macos-latest | |
INSTALL_DEPS: brew update-reset && HOMEBREW_NO_AUTO_UPDATE=1 HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1 brew install gcc swig libomp open-mpi openblas && if [ ! -f /usr/local/bin/gfortran ]; then ln -s /usr/local/bin/gfortran-$(brew list --versions gcc | awk '{print $2}' | cut -d. -f1) /usr/local/bin/gfortran; fi | |
# What operating system is this job running on? | |
runs-on: ${{ matrix.os }} | |
# Our CI steps for this job. | |
steps: | |
# Check out this repository code. | |
- name: Check out repository code | |
uses: actions/checkout@v3 | |
# Install Python. | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: ${{ matrix.INSTALL_DEPS }} | |
# Install our package. | |
- name: Install legacy_blinding | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install . | |
pytest ./tests | |
# Perform the unit test and outputs a coverage report | |
- name: Test with pytest | |
run: pytest --cov=blind_2pt_cosmosis --cov-report=xml ./tests | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v3 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |