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unit test for setup_pipeline complete #33

unit test for setup_pipeline complete

unit test for setup_pipeline complete #33

Workflow file for this run

# Author - Stuart McAlpine - [email protected] - Jan 2023
name: DESC Legacy Blinding for Cosmosis
# How does the workflow get triggered?
on:
# Triggers when push/pull-request made to the main branch.
pull_request:
branches:
- main
push:
branches:
- main
- develop
# List of jobs for this workflow.
jobs:
# Our pytest job.
legacy_blinding-pytest:
# Our strategy lists the OS and Python versions we want to test on.
strategy:
# Don't quit all jobs if only one job fails.
fail-fast: false
matrix:
python-version: ["3.9"]
os: [ubuntu-20.04, macos-latest]
include:
- os: ubuntu-20.04
INSTALL_DEPS: sudo apt-get update && sudo apt-get -y install gfortran-7 swig libopenmpi-dev openmpi-bin libopenblas-dev && sudo ln -s `which gfortran-7` /usr/local/bin/gfortran
- os: macos-latest
INSTALL_DEPS: brew update-reset && HOMEBREW_NO_AUTO_UPDATE=1 HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1 brew install gcc swig libomp open-mpi openblas && if [ ! -f /usr/local/bin/gfortran ]; then ln -s /usr/local/bin/gfortran-$(brew list --versions gcc | awk '{print $2}' | cut -d. -f1) /usr/local/bin/gfortran; fi
# What operating system is this job running on?
runs-on: ${{ matrix.os }}
# Our CI steps for this job.
steps:
# Check out this repository code.
- name: Check out repository code
uses: actions/checkout@v3
# Install Python.
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: ${{ matrix.INSTALL_DEPS }}
# Install our package.
- name: Install legacy_blinding
run: |
python -m pip install --upgrade pip
python -m pip install .
pytest ./tests
# Perform the unit test and outputs a coverage report
- name: Test with pytest
run: pytest --cov=blind_2pt_cosmosis --cov-report=xml ./tests
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v3
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}