Merge pull request #60 from benclifford/u/benc/coprocess-parameter #70

	name: gen3_workflow CI

	on:
	push:
	branches:
	- master
	- u/jchiang/gen3_scripts

	pull_request:
	branches:
	- master
	- u/jchiang/gen3_scripts

	jobs:
	build:
	runs-on: ${{ matrix.os }}

	strategy:
	matrix:
	os: [ ubuntu-latest ]
	py: [ "3.11" ]
	CC: [ gcc ]
	CXX: [ g++ ]

	defaults:
	run:
	# cf. https://github.com/conda-incubator/setup-miniconda#important
	shell: bash -l {0}

	steps:
	- uses: actions/checkout@v2

	- name: Setup conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: stack
	python-version: "3.11"
	condarc-file: etc/.condarc

	- name: Install conda deps
	run: \|
	conda info
	conda list
	conda install -y mamba
	mamba install -y --file conda_requirements.txt
	conda info
	conda list

	- name: Install workflow packages
	run: \|
	pip install -U --no-deps 'parsl[monitoring,workqueue] @ git+https://github.com/parsl/parsl@desc'
	pip install typeguard tblib paramiko dill pyzmq globus-sdk sqlalchemy_utils
	conda install -c conda-forge ndcctools=7.6.1=py311h689c632_0 --no-deps

	- name: Clone the package and checkout the branch
	shell: bash -l {0}
	run: \|
	git clone https://github.com/${GITHUB_REPOSITORY}
	eups declare gen3_workflow -r ${PWD}/gen3_workflow -t current
	cd gen3_workflow
	git fetch origin ${GITHUB_REF}:TESTING
	git checkout TESTING

	- name: Run the test pipelines
	run: \|
	setup gen3_workflow
	(eups list lsst_distrib) 2>&1 \| grep -v "Unknown tag"
	(eups list gen3_workflow) 2>&1 \| grep -v "Unknown tag"
	cd tests
	pytest test_query_workflow.py test_bps_restart.py

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