Merge pull request #33 from LL08-MathematicalModelling-dowell/DOCKERI…

…ZED_V2

Dockerized v2

.gitignore

@@ -55,4 +55,6 @@ venv/
 .idea/
 .vscode/
 .env
-.env*
+.env*
+
+.venv

Datacube_api_liberaries/python_library/datacubepp/.venv/Scripts/activate

@@ -0,0 +1,71 @@
+# This file must be used with "source bin/activate" *from bash*
+# You cannot run it directly
+
+deactivate () {
+    # reset old environment variables
+    if [ -n "${_OLD_VIRTUAL_PATH:-}" ] ; then
+        PATH="${_OLD_VIRTUAL_PATH:-}"
+        export PATH
+        unset _OLD_VIRTUAL_PATH
+    fi
+    if [ -n "${_OLD_VIRTUAL_PYTHONHOME:-}" ] ; then
+        PYTHONHOME="${_OLD_VIRTUAL_PYTHONHOME:-}"
+        export PYTHONHOME
+        unset _OLD_VIRTUAL_PYTHONHOME
+    fi
+
+    # Call hash to forget past locations. Without forgetting
+    # past locations the $PATH changes we made may not be respected.
+    # See "man bash" for more details. hash is usually a builtin of your shell
+    hash -r 2> /dev/null
+
+    if [ -n "${_OLD_VIRTUAL_PS1:-}" ] ; then
+        PS1="${_OLD_VIRTUAL_PS1:-}"
+        export PS1
+        unset _OLD_VIRTUAL_PS1
+    fi
+
+    unset VIRTUAL_ENV
+    unset VIRTUAL_ENV_PROMPT
+    if [ ! "${1:-}" = "nondestructive" ] ; then
+    # Self destruct!
+        unset -f deactivate
+    fi
+}
+
+# unset irrelevant variables
+deactivate nondestructive
+
+# on Windows, a path can contain colons and backslashes and has to be converted:
+if [ "${OSTYPE:-}" = "cygwin" ] || [ "${OSTYPE:-}" = "msys" ] ; then
+    # transform D:\path\to\venv to /d/path/to/venv on MSYS
+    # and to /cygdrive/d/path/to/venv on Cygwin
+    export VIRTUAL_ENV=$(cygpath 'C:\Users\Muhammad-Ib\Documents\Work\Datacube_V2\datacubepp\.venv')
+else
+    # use the path as-is
+    export VIRTUAL_ENV='C:\Users\Muhammad-Ib\Documents\Work\Datacube_V2\datacubepp\.venv'
+fi
+
+_OLD_VIRTUAL_PATH="$PATH"
+PATH="$VIRTUAL_ENV/"Scripts":$PATH"
+export PATH
+
+# unset PYTHONHOME if set
+# this will fail if PYTHONHOME is set to the empty string (which is bad anyway)
+# could use `if (set -u; : $PYTHONHOME) ;` in bash
+if [ -n "${PYTHONHOME:-}" ] ; then
+    _OLD_VIRTUAL_PYTHONHOME="${PYTHONHOME:-}"
+    unset PYTHONHOME
+fi
+
+if [ -z "${VIRTUAL_ENV_DISABLE_PROMPT:-}" ] ; then
+    _OLD_VIRTUAL_PS1="${PS1:-}"
+    PS1='(.venv) '"${PS1:-}"
+    export PS1
+    VIRTUAL_ENV_PROMPT='(.venv) '
+    export VIRTUAL_ENV_PROMPT
+fi
+
+# Call hash to forget past commands. Without forgetting
+# past commands the $PATH changes we made may not be respected
+hash -r 2> /dev/null

Datacube_api_liberaries/python_library/datacubepp/.venv/Scripts/activate.bat

@@ -0,0 +1,34 @@
+@echo off
+
+rem This file is UTF-8 encoded, so we need to update the current code page while executing it
+for /f "tokens=2 delims=:." %%a in ('"%SystemRoot%\System32\chcp.com"') do (
+    set _OLD_CODEPAGE=%%a
+)
+if defined _OLD_CODEPAGE (
+    "%SystemRoot%\System32\chcp.com" 65001 > nul
+)
+
+set "VIRTUAL_ENV=C:\Users\Muhammad-Ib\Documents\Work\Datacube_V2\datacubepp\.venv"
+
+if not defined PROMPT set PROMPT=$P$G
+
+if defined _OLD_VIRTUAL_PROMPT set PROMPT=%_OLD_VIRTUAL_PROMPT%
+if defined _OLD_VIRTUAL_PYTHONHOME set PYTHONHOME=%_OLD_VIRTUAL_PYTHONHOME%
+
+set _OLD_VIRTUAL_PROMPT=%PROMPT%
+set PROMPT=(.venv) %PROMPT%
+
+if defined PYTHONHOME set _OLD_VIRTUAL_PYTHONHOME=%PYTHONHOME%
+set PYTHONHOME=
+
+if defined _OLD_VIRTUAL_PATH set PATH=%_OLD_VIRTUAL_PATH%
+if not defined _OLD_VIRTUAL_PATH set _OLD_VIRTUAL_PATH=%PATH%
+
+set "PATH=%VIRTUAL_ENV%\Scripts;%PATH%"
+set "VIRTUAL_ENV_PROMPT=(.venv) "
+
+:END
+if defined _OLD_CODEPAGE (
+    "%SystemRoot%\System32\chcp.com" %_OLD_CODEPAGE% > nul
+    set _OLD_CODEPAGE=
+)

Datacube_api_liberaries/python_library/datacubepp/.venv/Scripts/deactivate.bat

@@ -0,0 +1,22 @@
+@echo off
+
+if defined _OLD_VIRTUAL_PROMPT (
+    set "PROMPT=%_OLD_VIRTUAL_PROMPT%"
+)
+set _OLD_VIRTUAL_PROMPT=
+
+if defined _OLD_VIRTUAL_PYTHONHOME (
+    set "PYTHONHOME=%_OLD_VIRTUAL_PYTHONHOME%"
+    set _OLD_VIRTUAL_PYTHONHOME=
+)
+
+if defined _OLD_VIRTUAL_PATH (
+    set "PATH=%_OLD_VIRTUAL_PATH%"
+)
+
+set _OLD_VIRTUAL_PATH=
+
+set VIRTUAL_ENV=
+set VIRTUAL_ENV_PROMPT=
+
+:END

Datacube_api_liberaries/python_library/datacubepp/.venv/Scripts/get_gprof

@@ -0,0 +1,75 @@
+#!C:\Users\Muhammad-Ib\Documents\Work\Datacube_V2\datacubepp\.venv\Scripts\python.exe
+#
+# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
+# Copyright (c) 2008-2016 California Institute of Technology.
+# Copyright (c) 2016-2024 The Uncertainty Quantification Foundation.
+# License: 3-clause BSD.  The full license text is available at:
+#  - https://github.com/uqfoundation/dill/blob/master/LICENSE
+'''
+build profile graph for the given instance
+
+running:
+  $ get_gprof <args> <instance>
+
+executes:
+  gprof2dot -f pstats <args> <type>.prof | dot -Tpng -o <type>.call.png
+
+where:
+  <args> are arguments for gprof2dot, such as "-n 5 -e 5"
+  <instance> is code to create the instance to profile
+  <type> is the class of the instance (i.e. type(instance))
+
+For example:
+  $ get_gprof -n 5 -e 1 "import numpy; numpy.array([1,2])"
+
+will create 'ndarray.call.png' with the profile graph for numpy.array([1,2]),
+where '-n 5' eliminates nodes below 5% threshold, similarly '-e 1' eliminates
+edges below 1% threshold
+'''
+
+if __name__ == "__main__":
+    import sys
+    if len(sys.argv) < 2:
+        print ("Please provide an object instance (e.g. 'import math; math.pi')")
+        sys.exit()
+    # grab args for gprof2dot
+    args = sys.argv[1:-1]
+    args = ' '.join(args)
+    # last arg builds the object
+    obj = sys.argv[-1]
+    obj = obj.split(';')
+    # multi-line prep for generating an instance
+    for line in obj[:-1]:
+        exec(line)
+    # one-line generation of an instance
+    try:
+        obj = eval(obj[-1])
+    except Exception:
+        print ("Error processing object instance")
+        sys.exit()
+
+    # get object 'name'
+    objtype = type(obj)
+    name = getattr(objtype, '__name__', getattr(objtype, '__class__', objtype))
+
+    # profile dumping an object
+    import dill
+    import os
+    import cProfile
+    #name = os.path.splitext(os.path.basename(__file__))[0]
+    cProfile.run("dill.dumps(obj)", filename="%s.prof" % name)
+    msg = "gprof2dot -f pstats %s %s.prof | dot -Tpng -o %s.call.png" % (args, name, name)
+    try:
+        res = os.system(msg)
+    except Exception:
+        print ("Please verify install of 'gprof2dot' to view profile graphs")
+    if res:
+        print ("Please verify install of 'gprof2dot' to view profile graphs")
+
+    # get stats
+    f_prof = "%s.prof" % name
+    import pstats
+    stats = pstats.Stats(f_prof, stream=sys.stdout)
+    stats.strip_dirs().sort_stats('cumtime')
+    stats.print_stats(20) #XXX: save to file instead of print top 20?
+    os.remove(f_prof)

Datacube_api_liberaries/python_library/datacubepp/.venv/Scripts/get_objgraph

@@ -0,0 +1,54 @@
+#!C:\Users\Muhammad-Ib\Documents\Work\Datacube_V2\datacubepp\.venv\Scripts\python.exe
+#
+# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
+# Copyright (c) 2008-2016 California Institute of Technology.
+# Copyright (c) 2016-2024 The Uncertainty Quantification Foundation.
+# License: 3-clause BSD.  The full license text is available at:
+#  - https://github.com/uqfoundation/dill/blob/master/LICENSE
+"""
+display the reference paths for objects in ``dill.types`` or a .pkl file
+
+Notes:
+    the generated image is useful in showing the pointer references in
+    objects that are or can be pickled.  Any object in ``dill.objects``
+    listed in ``dill.load_types(picklable=True, unpicklable=True)`` works.
+
+Examples::
+
+    $ get_objgraph ArrayType
+    Image generated as ArrayType.png
+"""
+
+import dill as pickle
+#pickle.debug.trace(True)
+#import pickle
+
+# get all objects for testing
+from dill import load_types
+load_types(pickleable=True,unpickleable=True)
+from dill import objects
+
+if __name__ == "__main__":
+    import sys
+    if len(sys.argv) != 2:
+        print ("Please provide exactly one file or type name (e.g. 'IntType')")
+        msg = "\n"
+        for objtype in list(objects.keys())[:40]:
+            msg += objtype + ', '
+        print (msg + "...")
+    else:
+        objtype = str(sys.argv[-1])
+        try:
+            obj = objects[objtype]
+        except KeyError:
+            obj = pickle.load(open(objtype,'rb'))
+            import os
+            objtype = os.path.splitext(objtype)[0]
+        try:
+            import objgraph
+            objgraph.show_refs(obj, filename=objtype+'.png')
+        except ImportError:
+            print ("Please install 'objgraph' to view object graphs")
+
+
+# EOF

Datacube_api_liberaries/python_library/datacubepp/.venv/Scripts/undill

@@ -0,0 +1,22 @@
+#!C:\Users\Muhammad-Ib\Documents\Work\Datacube_V2\datacubepp\.venv\Scripts\python.exe
+#
+# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
+# Copyright (c) 2008-2016 California Institute of Technology.
+# Copyright (c) 2016-2024 The Uncertainty Quantification Foundation.
+# License: 3-clause BSD.  The full license text is available at:
+#  - https://github.com/uqfoundation/dill/blob/master/LICENSE
+"""
+unpickle the contents of a pickled object file
+
+Examples::
+
+    $ undill hello.pkl
+    ['hello', 'world']
+"""
+
+if __name__ == '__main__':
+    import sys
+    import dill
+    for file in sys.argv[1:]:
+        print (dill.load(open(file,'rb')))
+

Datacube_api_liberaries/python_library/datacubepp/.venv/pyvenv.cfg

@@ -0,0 +1,5 @@
+home = C:\Users\Muhammad-Ib\AppData\Local\Microsoft\WindowsApps\PythonSoftwareFoundation.Python.3.12_qbz5n2kfra8p0
+include-system-site-packages = false
+version = 3.12.8
+executable = C:\Users\Muhammad-Ib\.virtualenvs\project_storefront--TctQYPv\Scripts\python.exe
+command = C:\Users\Muhammad-Ib\.virtualenvs\project_storefront--TctQYPv\Scripts\python.exe -m venv C:\Users\Muhammad-Ib\Documents\Work\Datacube_V2\datacubepp\.venv

Datacube_api_liberaries/python_library/datacubepp/MANIFEST.in

@@ -0,0 +1,5 @@
+include README.md
+include requirements.txt
+include LICENSE
+recursive-include docs *.md
+recursive-include tests *.py