Merge branch 'development' into experimental

.pre-commit-config.yaml

@@ -0,0 +1,15 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+    -   id: trailing-whitespace
+    -   id: end-of-file-fixer
+    -   id: check-added-large-files
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  rev: v0.4.1
+  hooks:
+    - id: ruff
+      args: [ "--select", "I", "--fix" ]
+    - id: ruff-format

README.md

@@ -5,15 +5,15 @@
 [![Documentation Status](https://readthedocs.org/projects/pylems/badge/?version=latest)](https://pylems.readthedocs.io/en/latest/?badge=latest)
 [![PyPI](https://img.shields.io/pypi/v/pylems)](https://pypi.org/project/pylems/)
 
-A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2  models (see [here](https://docs.neuroml.org/Userdocs/Software/pyLEMS.html)).
+A [LEMS](http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2  models (see [here](https://docs.neuroml.org/Userdocs/Software/pyLEMS.html)).
 
 For more about PyLEMS see:
 
 Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson,
 **libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience**
 [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038
 
-_**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_
+_**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_  
 
 For more details on LEMS see:
 

man/man1/pylems.1

@@ -1,5 +1,5 @@
-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.48.5.
-.TH PYLEMS "1" "November 2021" "https://lems.github.io" "User Commands"
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
+.TH PYLEMS "1" "September 2024" "https://lems.github.io" "User Commands"
 .SH NAME
 pylems \- LEMS interpreter implemented in Python
 .SH DESCRIPTION

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = PyLEMS
-version = 0.6.7
+version = 0.6.8
 author = PyLEMS authors and contributors
 author_email = [email protected], [email protected]
 maintainer_email = [email protected]
@@ -41,6 +41,10 @@ console_scripts =
 doc =
     sphinxcontrib-bibtex
 
+dev =
+    pre-commit
+    ruff
+
 [flake8]
 # ignore:
 # spacing around operators, comment blocks, in argument lists