Merge pull request #9 from Knowledge-Graph-Hub/makefile_fix

remove batch size specs
Knowledge-Graph-Hub · Sep 18, 2024 · bd2f770 · bd2f770
2 parents 7b6ceaa + efd72f7
commit bd2f770
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/Makefile b/Makefile
@@ -6,15 +6,12 @@ kg-microbe-core:
 	poetry run kg merge -m duckdb -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa" --merge-label $@
 
 kg-microbe-function:
-	poetry run kg merge -m duckdb -n 1000000 -e 100000 -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, uniprot_functional_microbes" --merge-label $@
+	poetry run kg merge -m duckdb -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, uniprot_functional_microbes" --merge-label $@
 
 kg-microbe-biomedical:
-	poetry run kg merge -m duckdb -n 1000000 -e 100000 -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, hp, mondo, ctd, wallen_etal, uniprot_human" --merge-label $@
+	poetry run kg merge -m duckdb -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, hp, mondo, ctd, wallen_etal, uniprot_human" --merge-label $@
 
 kg-microbe-biomedical-function:
-	poetry run kg merge -m duckdb -n 1000000 -e 100000 -s "bacdive, mediadive, madin_etal, rhea_mappings, bactotraits, chebi, ec, envo, go, ncbitaxon, upa, hp, mondo, ctd, wallen_etal, uniprot_human, uniprot_functional_microbes" --merge-label $@
-
-full-merge:
 	poetry run kg merge -m duckdb --merge-label $@
 
 include kg-microbe-merge.Makefile