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chaklim committed Dec 3, 2019
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Expand Up @@ -4,18 +4,18 @@ This document shows how to train a deep learning model for Clair.

## Prerequisitions
- A powerful GPU
- RTX Titan (tested)
- GTX 2080 Ti (tested)
- GTX 1080 Ti (tested)
- Any Nvidia card with 11GB memory or above will suffice, but speeds differ
- RTX Titan (tested)
- GTX 2080 Ti (tested)
- GTX 1080 Ti (tested)
- Any Nvidia card with 11GB memory or above will suffice, but speeds differ
- Clair installed
- GNU Parallel installed

## Catalogue
- [I. Preprocessing: Downsampling a sample](#i-preprocessing-downsampling-a-sample)
- [II. Build a compressed binary for training](#ii-build-a-compressed-binary-for-training)
- [Single individual](#single-individual)
- [Multiple individuals](#multiple-individuals)
- [Single individual](#single-individual)
- [Multiple individuals](#multiple-individuals)
- [III. Model training](#iii-model-training)

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