Fix bug on variant_map_from

- need to split all columns for this func
KewinOgink · Apr 3, 2020 · 54cfec0 · 54cfec0
1 parent adfc485
commit 54cfec0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/clair/utils.py b/clair/utils.py
@@ -116,7 +116,7 @@ def variant_map_from(var_fn, tree, is_tree_empty):
 
     f = subprocess_popen(shlex.split("gzip -fdc %s" % (var_fn)))
     for row in f.stdout:
-        columns = row.split(maxsplit=2)
+        columns = row.split()
         ctg_name, position_str = columns[0], columns[1]
 
         if not (is_tree_empty or is_region_in(tree, ctg_name, int(position_str))):