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Update documentation
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kapoorlab committed Oct 28, 2023
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13 changes: 11 additions & 2 deletions RANSAC.html
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Expand Up @@ -352,7 +352,8 @@ <h2> Contents </h2>
<nav aria-label="Page">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#tutorial">Tutorial</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#plugin-steps">Plugin Steps</a><ul class="nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#plugin-steps">Plugin Steps</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#outputs">Outputs</a><ul class="nav section-nav flex-column">
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#open-data">Open Data</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#first-run">First Run</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#correction">Correction</a></li>
Expand Down Expand Up @@ -392,6 +393,13 @@ <h2>Plugin Steps<a class="headerlink" href="#plugin-steps" title="Permalink to t
<li><p>If results don’t improve, manually fit using the Napari shapes layer and click “Recompute with manual functions.”</p></li>
<li><p>View growth rates, shrink rates, catastrophe, and rescue frequency in the “Plot” and “Table” tabs.</p></li>
</ul>
</section>
<section id="outputs">
<h2>Outputs<a class="headerlink" href="#outputs" title="Permalink to this headline">#</a></h2>
<ul class="simple">
<li><p>The Tabulour data contains dynamic instability measurments and can be saved with a right click as a csv.</p></li>
<li><p>The plots are interactive and can be saved as well showing measurments for the whole experiment.</p></li>
</ul>
<section id="open-data">
<h3>Open Data<a class="headerlink" href="#open-data" title="Permalink to this headline">#</a></h3>
<p><img alt="Open Data" src="_images/open_data.gif" /></p>
Expand Down Expand Up @@ -496,7 +504,8 @@ <h2>Function Fits on Segmented Pixels<a class="headerlink" href="#function-fits-
<nav class="bd-toc-nav page-toc">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#tutorial">Tutorial</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#plugin-steps">Plugin Steps</a><ul class="nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#plugin-steps">Plugin Steps</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#outputs">Outputs</a><ul class="nav section-nav flex-column">
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#open-data">Open Data</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#first-run">First Run</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#correction">Correction</a></li>
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5 changes: 5 additions & 0 deletions _sources/RANSAC.md
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- If results don't improve, manually fit using the Napari shapes layer and click "Recompute with manual functions."
- View growth rates, shrink rates, catastrophe, and rescue frequency in the "Plot" and "Table" tabs.

## Outputs

- The Tabulour data contains dynamic instability measurments and can be saved with a right click as a csv.
- The plots are interactive and can be saved as well showing measurments for the whole experiment.

### Open Data
![Open Data](images/open_data.gif)

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2 changes: 1 addition & 1 deletion searchindex.js

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