cell fate

src/napatrackmater/Trackmate.py

@@ -2035,7 +2035,9 @@ def _update_spot_fate(self, TrackIds, fate_label):
 
         for track_id in TrackIds:
             self.unique_track_fate_label[track_id] = fate_label
-            cell_ids = self.all_current_cell_ids[int(track_id)]
+            if track_id is not None:
+                if track_id is not self.TrackidBox:
+                    cell_ids = self.all_current_cell_ids[int(track_id)]
             for cell_id in cell_ids:
                 self.unique_spot_properties[cell_id].update({self.fate_key: fate_label})
 

src/napatrackmater/Trackvector.py

@@ -230,16 +230,25 @@ def _get_track_vector_xml_data(self):
         self.AllTrackIds = []
         self.DividingTrackIds = []
         self.NormalTrackIds = []
+        self.GobletTrackIds = []
+        self.BasalTrackIds = []
+        self.RadialTrackIds = []
         self.all_track_properties = []
         self.split_points_times = []
 
         self.AllTrackIds.append(None)
         self.DividingTrackIds.append(None)
         self.NormalTrackIds.append(None)
+        self.GobletTrackIds.append(None)
+        self.BasalTrackIds.append(None)
+        self.RadialTrackIds.append(None)
 
         self.AllTrackIds.append(self.TrackidBox)
         self.DividingTrackIds.append(self.TrackidBox)
         self.NormalTrackIds.append(self.TrackidBox)
+        self.GobletTrackIds.append(self.TrackidBox)
+        self.BasalTrackIds.append(self.TrackidBox)
+        self.RadialTrackIds.append(self.TrackidBox)
 
         self.Spotobjects = self.xml_content.find("Model").find("AllSpots")
         # Extract the tracks from xml
@@ -750,8 +759,6 @@ def build_closeness_dict(self, radius):
             self.closeness_dict[time_point] = closeness_dict_time_point
 
 
-
-
 def _iterate_over_tracklets(
     track_data, training_tracklets, track_id, prediction=False, ignore_columns=[]
 ):

src/napatrackmater/_version.py

@@ -1,2 +1,2 @@
-__version__ = version = "5.3.9"
-__version_tuple__ = version_tuple = (5, 3, 9)
+__version__ = version = "5.4.0"
+__version_tuple__ = version_tuple = (5, 4, 0)