Feature inversion pipeline for modular iCNN construction #82
ci.yml
on: pull_request
lint
7s
type-check
2m 11s
Matrix: test
Annotations
33 errors and 10 warnings
lint
Process completed with exit code 1.
|
test (3.11)
Process completed with exit code 1.
|
test (3.10)
Process completed with exit code 1.
|
test (3.8):
tests/test_mri.py#L23
TestMri.test_add_load_epi_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.8):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.8):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0002
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.8):
tests/bdata/test_bdata.py#L31
TestBdata.test_add_get
AssertionError:
Arrays are not equal
(shapes (5, 0, 38), (5, 10) mismatch)
x: array([], shape=(5, 0, 38), dtype=float64)
y: array([[0.830566, 0.250171, 0.031175, 0.129577, 0.403427, 0.056751,
0.00774 , 0.697441, 0.797855, 0.077981],
[0.050907, 0.833532, 0.290016, 0.440061, 0.73638 , 0.137197,...
|
test (3.8):
tests/bdata/test_bdata.py#L88
TestBdata.test_metadata_add_get_where
AssertionError:
Arrays are not equal
(shapes (0, 18), (10,) mismatch)
x: array([], shape=(0, 18), dtype=float64)
y: array([0.229098, 0.389384, 0.812002, 0.279074, 0.052899, 0.305972,
0.730135, 0.346763, 0.203851, 0.48317 ])
|
test (3.8):
tests/bdata/test_bdata.py#L126
TestBdata.test_select
AssertionError:
Arrays are not equal
(shapes (5, 0, 15), (5, 10) mismatch)
x: array([], shape=(5, 0, 15), dtype=float64)
y: array([[0.102053, 0.210325, 0.934738, 0.86697 , 0.737248, 0.647359,
0.467195, 0.960536, 0.456833, 0.739265],
[0.650222, 0.315414, 0.92033 , 0.896793, 0.017379, 0.450842,...
|
test (3.8):
tests/bdata/test_bdata.py#L154
TestBdata.test_vmap_add_get
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.8):
tests/bdata/test_bdata.py#L164
TestBdata.test_vmap_add_insufficient_vmap
AssertionError: ValueError not raised
|
test (3.8):
tests/bdata/test_bdata.py#L172
TestBdata.test_vmap_add_same_map
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.8):
tests/bdata/test_bdata.py#L224
TestBdata.test_vmap_add_unnecessary_vmap
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.9):
tests/test_mri.py#L23
TestMri.test_add_load_epi_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.9):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0001
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.9):
tests/test_mri.py#L23
TestMri.test_get_roiflag_pass0002
FileNotFoundError: [Errno 2] No such file or directory: '/home/runner/work/bdpy/bdpy/tests/data/mri/epi.mat'
|
test (3.9):
tests/bdata/test_bdata.py#L31
TestBdata.test_add_get
AssertionError:
Arrays are not equal
(shapes (5, 0, 38), (5, 10) mismatch)
x: array([], shape=(5, 0, 38), dtype=float64)
y: array([[0.561006, 0.590866, 0.882878, 0.675647, 0.010123, 0.147159,
0.802403, 0.752369, 0.689201, 0.443898],
[0.808462, 0.639332, 0.149268, 0.264564, 0.94515 , 0.621342,...
|
test (3.9):
tests/bdata/test_bdata.py#L88
TestBdata.test_metadata_add_get_where
AssertionError:
Arrays are not equal
(shapes (0, 18), (10,) mismatch)
x: array([], shape=(0, 18), dtype=float64)
y: array([0.313949, 0.538548, 0.537339, 0.806358, 0.390946, 0.76968 ,
0.231163, 0.395995, 0.69067 , 0.023816])
|
test (3.9):
tests/bdata/test_bdata.py#L126
TestBdata.test_select
AssertionError:
Arrays are not equal
(shapes (5, 0, 15), (5, 10) mismatch)
x: array([], shape=(5, 0, 15), dtype=float64)
y: array([[0.921088, 0.012489, 0.36054 , 0.366164, 0.830314, 0.751341,
0.199629, 0.876526, 0.070245, 0.847653],
[0.455505, 0.097684, 0.136223, 0.525587, 0.212687, 0.044338,...
|
test (3.9):
tests/bdata/test_bdata.py#L154
TestBdata.test_vmap_add_get
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.9):
tests/bdata/test_bdata.py#L163
TestBdata.test_vmap_add_insufficient_vmap
AssertionError: ValueError not raised
|
test (3.9):
tests/bdata/test_bdata.py#L172
TestBdata.test_vmap_add_same_map
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
test (3.9):
tests/bdata/test_bdata.py#L224
TestBdata.test_vmap_add_unnecessary_vmap
AssertionError: assert {} == {1: 'label-1'... 4: 'label-4'}
Right contains 4 more items:
{1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
Full diff:
- {1: 'label-1', 2: 'label-2', 3: 'label-3', 4: 'label-4'}
+ {}
|
Error code: `import-untyped`:
bdpy/fig/tile_images.py#L4
Library stubs not installed for "PIL"
|
Error code: `import-untyped`:
bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib.pyplot": module is installed, but missing library stubs or py.typed marker
|
Error code: `import-untyped`:
bdpy/fig/tile_images.py#L5
Skipping analyzing "matplotlib": module is installed, but missing library stubs or py.typed marker
|
Error code: `import-untyped`:
bdpy/fig/tile_images.py#L6
Skipping analyzing "matplotlib.gridspec": module is installed, but missing library stubs or py.typed marker
|
Error code: `import-untyped`:
bdpy/util/info.py#L13
Library stubs not installed for "yaml"
|
Error code: `arg-type`:
bdpy/util/info.py#L24
Argument 1 to "md5" has incompatible type "str"; expected "Buffer"
|
Error code: `var-annotated`:
bdpy/util/utils.py#L48
Need type annotation for "group_vector" (hint: "group_vector: List[<type>] = ...")
|
Error code: `assignment`:
bdpy/util/utils.py#L64
Incompatible types in assignment (expression has type "ndarray[Any, dtype[Any]]", variable has type "List[Any]")
|
Error code: `union-attr`:
bdpy/util/utils.py#L118
Item "List[Any]" of "Union[List[Any], ndarray[Any, Any]]" has no attribute "ndim"
|
Error code: `call-overload`:
bdpy/util/utils.py#L119
No overload variant of "__getitem__" of "list" matches argument type "List[Any]"
|
test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
|
test (3.11)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
|
test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest-coverage.txt" doesn't exist
|
test (3.10)
File "/home/runner/work/bdpy/bdpy/pytest.yml" doesn't exist
|
type-check:
bdpy/util/utils.py#L119
Possible overload variants:
|
type-check:
bdpy/util/utils.py#L121
Possible overload variants:
|
type-check:
bdpy/dataset/utils.py#L11
Hint: "python3 -m pip install types-tqdm"
|
type-check:
bdpy/dataset/utils.py#L11
(or run "mypy --install-types" to install all missing stub packages)
|
type-check:
bdpy/dataset/utils.py#L11
See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
|
Error code: `annotation-unchecked`:
bdpy/dataform/features.py#L382
By default the bodies of untyped functions are not checked, consider using --check-untyped-defs
|