add imaging mass cytometry

KPMP · Apr 15, 2024 · b064516 · b064516
1 parent 58b4e3c
commit b064516
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Showing 3 changed files with 23 additions and 2 deletions.
diff --git a/src/main/java/org/kpmp/DataTypeEnum.java b/src/main/java/org/kpmp/DataTypeEnum.java
@@ -14,6 +14,7 @@ public enum DataTypeEnum {
 	SPATIAL_LIPIDOMICS("sl"),
 	SPATIAL_METABOLOMICS("sm"),
 	SPATIAL_NGLYCOMICS("sng"),
+    IMAGING_MASS_CYTOMETRY("imc"),
 	UNKNOWN("");
 
 	private String abbreviation;
@@ -49,7 +50,9 @@ public static DataTypeEnum fromAbbreviation(String abbreviation) {
 			return SPATIAL_METABOLOMICS;
 		} else if (SPATIAL_NGLYCOMICS.abbreviation.equals(abbreviation)) {
 			return SPATIAL_NGLYCOMICS;
-		}
+		}else if (IMAGING_MASS_CYTOMETRY.abbreviation.equals(abbreviation)){
+            return IMAGING_MASS_CYTOMETRY;
+        }
 		return UNKNOWN;
 	}
 }
diff --git a/src/main/java/org/kpmp/FullDataTypeEnum.java b/src/main/java/org/kpmp/FullDataTypeEnum.java
@@ -14,6 +14,7 @@ public enum FullDataTypeEnum {
 	SPATIAL_LIPIDOMICS_FULL("Spatial Lipidomics"),
 	SPATIAL_METABOLOMICS_FULL("Spatial Metabolomics"),
 	SPATIAL_NGLYCOMICS_FULL("Spatial N-glycomics"),
+    IMAGING_MASS_CYTOMETRY_FULL("Imaging Mass Cytometry"),
 	UNKNOWN_FULL("");
 
 	private String dataEnum;
@@ -49,7 +50,9 @@ public static FullDataTypeEnum fromLong(String dataEnum) {
 			return SPATIAL_METABOLOMICS_FULL;
 		} else if (SPATIAL_NGLYCOMICS_FULL.dataEnum.equals(dataEnum)) {
 			return SPATIAL_NGLYCOMICS_FULL;
-		}
+		}else if (IMAGING_MASS_CYTOMETRY_FULL.dataEnum.equals(dataEnum)){
+            return IMAGING_MASS_CYTOMETRY_FULL;
+        }
 		return UNKNOWN_FULL;
 	}
 }
diff --git a/src/main/java/org/kpmp/dataSummary/DataSummaryService.java b/src/main/java/org/kpmp/dataSummary/DataSummaryService.java
@@ -240,6 +240,21 @@ public List<DataTypeSummary> getSummaryData() {
 						FullDataTypeEnum.SPATIAL_NGLYCOMICS_FULL.getFullName()),
 				dataSummaryRepository
 						.getParticipantSummaryLinkCount(FullDataTypeEnum.SPATIAL_NGLYCOMICS_FULL.getFullName())));
+
+        summaryData.add(new DataTypeSummary(OmicsTypeEnum.TRANSCRIPTOMICS.getEnum(),
+                FullDataTypeEnum.IMAGING_MASS_CYTOMETRY_FULL.getFullName(),
+                DataTypeEnum.IMAGING_MASS_CYTOMETRY.getAbbreviation(),
+                dataSummaryRepository.getDataSummaryLinkCount(TissueTypeEnum.AKI.getParticipantTissueType(),
+                        FullDataTypeEnum.IMAGING_MASS_CYTOMETRY_FULL.getFullName()),
+                dataSummaryRepository.getDataSummaryLinkCount(TissueTypeEnum.CKD.getParticipantTissueType(),
+                        FullDataTypeEnum.IMAGING_MASS_CYTOMETRY_FULL.getFullName()),
+                dataSummaryRepository.getDataSummaryLinkCount(
+                        TissueTypeEnum.HEALTHY_REFERENCE.getParticipantTissueType(),
+                        FullDataTypeEnum.IMAGING_MASS_CYTOMETRY_FULL.getFullName()),
+                dataSummaryRepository.getDataSummaryLinkCount(TissueTypeEnum.DMR.getParticipantTissueType(),
+                        FullDataTypeEnum.IMAGING_MASS_CYTOMETRY_FULL.getFullName()),
+                dataSummaryRepository
+                        .getParticipantSummaryLinkCount(FullDataTypeEnum.IMAGING_MASS_CYTOMETRY_FULL.getFullName())));
 		return summaryData;
 	}
 }