JuliaBUGS support #1125
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: ['*'] | |
| pull_request: | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: only if it is a pull request build. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| jobs: | |
| # test using MPICH as MPI backend (default in MPI.jl) | |
| test-MPICH-jll: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.9' | |
| - '1.10' | |
| os: | |
| - ubuntu-latest | |
| - macos-13 | |
| - windows-latest | |
| steps: | |
| - name: Enable long paths on windows | |
| if: ${{ startsWith(matrix.os, 'windows') }} | |
| run: | | |
| REG ADD "HKLM\SYSTEM\CurrentControlSet\Control\FileSystem" /v LongPathsEnabled /t REG_DWORD /d 1 /f | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '11' | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-runtest@v1 | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false # or true if you want CI to fail when Codecov fails | |
| file: lcov.info | |
| # test OpenMPI by requesting it with MPIPreferences | |
| # adapted from MPI.jl | |
| test-OpenMPI-jll: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - OpenMPI_jll - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| version: | |
| - '1.9' | |
| os: | |
| - ubuntu-latest | |
| fail-fast: false | |
| env: | |
| JULIA_MPI_TEST_BINARY: OpenMPI_jll | |
| JULIA_MPI_TEST_ABI: OpenMPI | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: use OpenMPI_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.instantiate() | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("OpenMPI_jll") | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@v1 | |
| # # CI is getting too slow! | |
| # test system MPI using Brew in macOS | |
| # adapted from MPI.jl | |
| test-system-MPI-brew: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.mpi }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.10' | |
| os: | |
| - macos-13 | |
| mpi: | |
| - mpich | |
| - openmpi | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| ZES_ENABLE_SYSMAN: 1 # https://github.com/open-mpi/ompi/issues/10142 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install MPI via homebrew | |
| run: | | |
| brew install "${{ matrix.mpi }}" | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '11' | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: use system MPI | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.instantiate() | |
| using MPIPreferences | |
| mpi_prefix = readchomp(`brew --prefix ${{ matrix.mpi }}`) | |
| libdir = joinpath(mpi_prefix, "lib") | |
| MPIPreferences.use_system_binary(; extra_paths=[libdir]) | |
| run(`sed -i.bu 's/unknown/MPICH/' test/LocalPreferences.toml`) # fix wrong abi detection for mpich | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@v1 | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '11' | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '1.10' | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-docdeploy@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - run: | | |
| julia --project=docs -e ' | |
| using Documenter: DocMeta, doctest | |
| using Pigeons | |
| DocMeta.setdocmeta!(Pigeons, :DocTestSetup, :(using Pigeons); recursive=true) | |
| doctest(Pigeons)' |