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APEC_VFs_metadata.txt
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APEC_VFs_metadata.txt
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Gene Description AccessionNumber Name LocusTag StartPosition EndPosition GeneLength CDSProteinID CDSProduct NCBINotes
ibeA invasin AY248744.1 "Escherichia coli strain BEN 2908 invasion protein IbeA (ibeA) gene, complete cds" ibeA 1 1456 1456 AAP80140.1 invasion protein IbeA NA
ompTp plasmid-encoded outer membrane protease AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV26 114321 115274 954 ABA54754.1 outer membrane protein OmpT outer membrane protein; protease precursor; similar to SwissProt Accession Number P58603
sitA Sit iron transport system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV1 91375 92289 915 ABA54731.1 periplasmic iron-binding protein SitA periplasmic iron-binding protein; similar to NP_753508
sitB Sit iron transport system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV2 92289 93116 828 ABA54732.1 iron transport protein SitB iron transport protein; ATP-binding component; similar to NP_753507
sitC Sit iron transport system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV3 93113 93949 837 ABA54733.1 iron transport protein SitC iron transport protein; inner membrane component; similar to NP_753506
sitD Sit iron transport system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV4 93968 94825 858 ABA54734.1 iron transport protein SitD iron transport protein; inner membrane component
iucA Aerobactin iron acquisition system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV11 98089 99870 1782 ABA54740.1 aerobactin biosynthesis protein IucA aerobactin biosynthesis protein; similar to GenBank Accession Number CAA53707
iucB Aerobactin iron acquisition system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV12 99871 100818 948 ABA54741.1 aerobactin biosynthesis protein IucB N-hydroxylysine acetylase; aerobactin biosynthesis protein; similar to GenBank Accession Number CAH64815
iucC Aerobactin iron acquisition system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV13 100818 102560 1743 ABA54742.1 aerobactin biosynthesis protein IucC aerobactin biosynthesis protein; similar to GenBank Accession Number CAH64814
iucD Aerobactin iron acquisition system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV14 102557 103834 1278 ABA54743.1 L-lysine 6-monooxigenase IucD L-lysine 6-monooxigenase; similar to GenBank Accession Number CAE55773
iutA Aerobactin iron acquisition system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV15 103916 106117 2202 ABA54744.1 ferric aerobactin receptor IutA ferric aerobactin receptor; similar to GenBank Accession Number CAE55774
iss increased serum survival gene AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV49 137931 138239 309 AAS80261.1 Iss involved in increased serum survival and complement resistance; similar to GenBank Accession Number AAD41540
cvaA ColV microcin system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV63 155164 156075 912 AAX22080.2 colicin V secretion protein CvaA colicin V secretion protein; similar to GenBank Accession Number CAA40743
cvaB ColV microcin system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV64 156050 158164 2115 AAX22079.2 colicin V secretion protein CvaB colicin V secretion protein; similar to GenBank Accession Number CAA40744
cvaC ColV microcin system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV65 158334 158645 312 AAX22078.1 colicin V synthesis protein CvaC colicin V synthesis protein
cvi ColV microcin system AY545598.5 "Escherichia coli plasmid pAPEC-O2-ColV, complete sequence" O2ColV66 158623 158859 237 AAT35245.1 colicin V immunity protein Cvi colicin V immunity protein
aec35 BEN2908 pathogenicity island AY857617.1 "Escherichia coli strain BEN2908 tRNA-Sec gene, complete sequence; pathogenicity island EPI-I, complete sequence; NlpA (nlpA), and YicM' (yicM') genes, complete cds" aec35 3635 4705 1071 AAW51718.1 putative transcriptional regulator Aec35 putative transcriptional regulator; LacI-family; similar to c4494 of E. coli CFT073; belongs to LacI-family regulatory protein
aec36 BEN2908 pathogenicity island AY857617.1 "Escherichia coli strain BEN2908 tRNA-Sec gene, complete sequence; pathogenicity island EPI-I, complete sequence; NlpA (nlpA), and YicM' (yicM') genes, complete cds" aec36 4910 6268 1359 AAW51719.1 putative MFS superfamily hexuronate transporter Aec36 putative MFS superfamily hexuronate transporter; similar to c4495 from E. coli CFT073
aec37 BEN2908 pathogenicity island AY857617.1 "Escherichia coli strain BEN2908 tRNA-Sec gene, complete sequence; pathogenicity island EPI-I, complete sequence; NlpA (nlpA), and YicM' (yicM') genes, complete cds" aec37 6277 8664 2388 AAW51720.1 putative glucosidase Aec37 putative glucosidase-family 31 of glycosyl hydrolases
irp2 Yersiniabactin iron acquisition CP000468.1 "Escherichia coli APEC O1, complete genome" APECO1_1058 2099745 2105870 6126 ABJ01361.1 yersiniabactin biosynthetic protein NA
fyuA Yersiniabactin iron acquisition CP000468.1 "Escherichia coli APEC O1, complete genome" APECO1_1063 2119056 2121077 2022 ABJ01366.1 pesticin/yersiniabactin receptor protein NA
tia invasin CP000468.1 "Escherichia coli APEC O1, complete genome" APECO1_3530 3312302 3313057 756 ABJ02397.1 Tia invasion determinant NA
papC Pap pili CP000468.1 "Escherichia coli APEC O1, complete genome" APECO1_3521 3320140 3322659 2520 ABJ02406.1 outer membrane usher protein PapC NA
ireA iron regulated element CP000468.1 "Escherichia coli APEC O1, complete genome" APECO1_3497 3344416 3346464 2049 ABJ02430.1 iron-regulated element NA
vat vacuolating autotransporter CP023388.1 "Escherichia coli strain 1105 chromosome, complete genome" CNQ47_20130 3883445 3887575 4131 ATC18706.1 autotransporter outer membrane beta-barrel domain-containing protein Derived by automated computational analysis using gene prediction method: Protein Homology.
tsh temperature-sensitive hemagglutinin DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM73 58775 62908 4134 ABD51643.1 temperature sensitive hemagglutinin Tsh temperature sensitive hemagglutinin; similar to AAA24698; identified by match to protein family HMM PF02395
aatA autotransporter adhesin DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM96 81930 85427 3498 ABD51666.1 putative adhesin; conserved hypothetical protein putative adhesin; similar to BAB33785; identified by match to protein family HMM PF03212; match to protein family HMM PF03797
eitD Eit iron transport system DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM99 86860 88182 1323 ABD51669.1 "putative iron transport system, membrane component EitD" "putative iron transport system, membrane component; similar to ABA54770; identified by match to protein family HMM PF07690"
eitC Eit iron transport system DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM100 88104 88877 774 ABD51670.1 "putative iron transport system, ATP-binding component EitC" "putative iron transport system, ATP-binding component; similar to AAX22060; identified by match to protein family HMM PF00005"
eitB Eit iron transport system DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM101 88865 89917 1053 ABD51671.1 "putative iron transport system, permease component EitB" "putative iron transport system, permease component; similar to AAX22061; identified by match to protein family HMM PF01032"
eitA Eit iron transport system DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM102 89902 90916 1015 ABD51672.1 "putative iron transport system, periplasmic binding protein EitA" "putative iron transport system, periplasmic binding protein; similar to AAX22062; identified by match to protein family HMM PF01497"
cmi Colicin M immunity DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM117 100424 100849 426 ABD51687.1 colicin M immunity protein Cmi colicin M immunity protein; similar to IMMM_ECOLI
cma Colicin M activity DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM118 100899 101726 828 ABD51688.1 colicin M activity protein Cma colicin M activity protein; similar to CEAM_ECOLI
cbi Colicin B immunity DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM119 101944 102485 542 ABD51690.1 colicin B immunity protein Cbi colicin B immunity protein; similar to IMMB_ECOLI
cba Colicin B activity DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM120 102518 102637 120 ABD51691.1 colicin B activity protein Cba colicin B activity protein; similar to CEAB_ECOLI
iroN Salmochelin Iro iron acquisition DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM137 113564 115752 2189 ABD51708.1 "salmochelin siderophore system, salmochelin receptor IroN" "salmochelin siderophore system, salmochelin receptor; similar to AAS80269; identified by match to protein family HMM PF00593"
iroE Salmochelin Iro iron acquisition DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM138 115797 116771 975 ABD51709.1 salmochelin siderophore system component IroE salmochelin siderophore system component; similar to AAP42473
iroD Salmochelin Iro iron acquisition DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM139 116838 118078 1241 ABD51710.1 "salmochelin siderophore system, ferric enterochelin esterase IroD" "salmochelin siderophore system, ferric enterochelin esterase; similar to AAS80267; identified by match to protein family HMM PF"
iroC Salmochelin Iro iron acquisition DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM140 118171 121956 3786 ABD51711.1 "salmochelin siderophore system, ATP-binding cassette IroC" "salmochelin siderophore system, ATP-binding cassette; similar to AAP41471; identified by match to protein family HMM PF00005"
iroB Salmochelin Iro iron acquisition DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM141 121970 123133 1164 ABD51712.1 "salmochelin siderophore system, glycosyltransferase IroB" "salmochelin siderophore system, glycosyltransferase; similar to AAS80265; identified by match to protein family HMM PF06722"
hlyF avian hemolysin and antimicrobial peptide degradation DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM189 162836 163959 1124 ABD51760.1 putative avian hemolysin HlyF putative avian hemolysin; similar to AAO49613; identified by match to protein family HMM PF01073
etsA Ets iron transport system DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM197 169620 170821 1202 ABD51767.1 "E. coli transport system, membrane fusion protein EtsA" "E. coli transport system, membrane fusion protein; similar to ABA54761; identified by match to protein family HMM PF00529"
etsB Ets iron transport system DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM198 170805 172758 1954 ABD51768.1 "E. coli transport system, ATP-binding/permease protein EtsB" "E. coli transport system, ATP-binding/permease protein; similar to ABA54762; identified by match to protein family HMM PF00005"
etsC Ets iron transport system DQ381420.1 "Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequence" APECO1_O1CoBM199 172762 174132 1371 ABD51769.1 "E. coli transport system, efflux protein EtsC" "E. coli transport system, efflux protein; similar to ABA54763; identified by match to protein family HMM PF02321"
cib ColI-b activity HQ114281.1 "Escherichia coli plasmid pND11_107, complete sequence" ND11IncI1_27 24960 26840 1881 ADW79480.1 colicin Ib protein NA
cibI ColI-b immunity HQ114281.1 "Escherichia coli plasmid pND11_107, complete sequence" ND11IncI1_28 26858 27205 348 ADW79481.1 colicin Ib immunity protein NA